BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0495700 Os05g0495700|AK101484
(552 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0495700 Similar to Glycerol-3-phosphate dehydrogenase-... 1084 0.0
Os01g0801600 Similar to Glycerol-3-phosphate dehydrogenase-... 828 0.0
Os01g0939600 Similar to Glycerol-3-phosphate dehydrogenase-... 782 0.0
>Os05g0495700 Similar to Glycerol-3-phosphate dehydrogenase-like protein
(Fragment)
Length = 552
Score = 1084 bits (2804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/552 (96%), Positives = 532/552 (96%)
Query: 1 KPRTNFIRFFAFSPPHLLLDTDLSSSARGIQTRGLAGWPRLASPRSDSECPAGATISCRP 60
KPRTNFIRFFAFSPPHLLLDTDLSSSARGIQTRGLAGWPRLASPRSDSECPAGATISCRP
Sbjct: 1 KPRTNFIRFFAFSPPHLLLDTDLSSSARGIQTRGLAGWPRLASPRSDSECPAGATISCRP 60
Query: 61 NPSHRSPTPTSRLLFLDPLSSCLASSAMXXXXXXXXXXXXXXXXXXXXKLDELRRRMGKA 120
NPSHRSPTPTSRLLFLDPLSSCLASSAM KLDELRRRMGKA
Sbjct: 61 NPSHRSPTPTSRLLFLDPLSSCLASSAMVGSYAAGGGRGAAVAAVAEGKLDELRRRMGKA 120
Query: 121 DGDLLRIVGVGGGAWGSAFCALLQDAYGRHRDKAQVRVWRRPGRAVDRATAEHLFEVINS 180
DGDLLRIVGVGGGAWGSAFCALLQDAYGRHRDKAQVRVWRRPGRAVDRATAEHLFEVINS
Sbjct: 121 DGDLLRIVGVGGGAWGSAFCALLQDAYGRHRDKAQVRVWRRPGRAVDRATAEHLFEVINS 180
Query: 181 REDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGFCLNMVDTPLCPLKVVTNLQEAVW 240
REDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGFCLNMVDTPLCPLKVVTNLQEAVW
Sbjct: 181 REDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGFCLNMVDTPLCPLKVVTNLQEAVW 240
Query: 241 DADIVINGLPSTETREVFGEIGRYWKERIRPPVIISLAKGIEASIDPVPRIITPTQMISN 300
DADIVINGLPSTETREVFGEIGRYWKERIRPPVIISLAKGIEASIDPVPRIITPTQMISN
Sbjct: 241 DADIVINGLPSTETREVFGEIGRYWKERIRPPVIISLAKGIEASIDPVPRIITPTQMISN 300
Query: 301 ATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQPHFIVWDNSDLIT 360
ATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQPHFIVWDNSDLIT
Sbjct: 301 ATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQPHFIVWDNSDLIT 360
Query: 361 HEVMGGLKNIYAIGAGMVAALTNESATSKSVYFSLCTSEMIYITHLLAEDPEKLAGPLLA 420
HEVMGGLKNIYAIGAGMVAALTNESATSKSVYFSLCTSEMIYITHLLAEDPEKLAGPLLA
Sbjct: 361 HEVMGGLKNIYAIGAGMVAALTNESATSKSVYFSLCTSEMIYITHLLAEDPEKLAGPLLA 420
Query: 421 DTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVHAFYELLSQSSLSVTHP 480
DTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVHAFYELLSQSSLSVTHP
Sbjct: 421 DTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVHAFYELLSQSSLSVTHP 480
Query: 481 EVKKLVAPVELCPILKTLYKILIKRELATDSILQAIRDESMYDPRERIEMSQRQCLYRPS 540
EVKKLVAPVELCPILKTLYKILIKRELATDSILQAIRDESMYDPRERIEMSQRQCLYRPS
Sbjct: 481 EVKKLVAPVELCPILKTLYKILIKRELATDSILQAIRDESMYDPRERIEMSQRQCLYRPS 540
Query: 541 LLGLPKVDITQA 552
LLGLPKVDITQA
Sbjct: 541 LLGLPKVDITQA 552
>Os01g0801600 Similar to Glycerol-3-phosphate dehydrogenase-like protein
(Fragment)
Length = 552
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/440 (90%), Positives = 416/440 (94%)
Query: 109 KLDELRRRMGKADGDLLRIVGVGGGAWGSAFCALLQDAYGRHRDKAQVRVWRRPGRAVDR 168
KLDELRR +GKADGD LRIVGVG GAWGS FCAL+QDAYG RDK QVR+WRRPGRAVDR
Sbjct: 110 KLDELRRLLGKADGDPLRIVGVGAGAWGSVFCALMQDAYGHLRDKVQVRIWRRPGRAVDR 169
Query: 169 ATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGFCLNMVDTPLCP 228
ATAEHLFEVIN+REDVLRRLIRRCAYLKYVE RLGDRTLYADEILRDGFCLNM+DTPLCP
Sbjct: 170 ATAEHLFEVINAREDVLRRLIRRCAYLKYVEGRLGDRTLYADEILRDGFCLNMIDTPLCP 229
Query: 229 LKVVTNLQEAVWDADIVINGLPSTETREVFGEIGRYWKERIRPPVIISLAKGIEASIDPV 288
LKVVTNLQEAVWDADIVINGLPST+TREVFGEIGRYWKERI P+I+SLAKGIEAS+DP+
Sbjct: 230 LKVVTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEASLDPL 289
Query: 289 PRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQP 348
PRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQP
Sbjct: 290 PRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQP 349
Query: 349 HFIVWDNSDLITHEVMGGLKNIYAIGAGMVAALTNESATSKSVYFSLCTSEMIYITHLLA 408
HFIVWDNSDLITHEVMGGLKN+YAIGAGMVAALTNESATSKSVYF+LCTSEMIYITHLL
Sbjct: 350 HFIVWDNSDLITHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFALCTSEMIYITHLLE 409
Query: 409 EDPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVHAFYE 468
E+PEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAV+AFYE
Sbjct: 410 EEPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVNAFYE 469
Query: 469 LLSQSSLSVTHPEVKKLVAPVELCPILKTLYKILIKRELATDSILQAIRDESMYDPRERI 528
LLSQ SLSV HPE + VAPVE+CPILK LYKILIKREL DSILQAIRDE+MYDPRERI
Sbjct: 470 LLSQDSLSVMHPEANRSVAPVEMCPILKALYKILIKRELPPDSILQAIRDETMYDPRERI 529
Query: 529 EMSQRQCLYRPSLLGLPKVD 548
EM+Q LYRPSLLG PK D
Sbjct: 530 EMAQGHSLYRPSLLGQPKGD 549
>Os01g0939600 Similar to Glycerol-3-phosphate dehydrogenase-like protein
(Fragment)
Length = 456
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/437 (85%), Positives = 402/437 (91%)
Query: 109 KLDELRRRMGKADGDLLRIVGVGGGAWGSAFCALLQDAYGRHRDKAQVRVWRRPGRAVDR 168
+LDELRR +GK+DGDLL+IVG+G GAWGS F ALLQDAYGR R+K Q+R+WRR GR+VDR
Sbjct: 20 RLDELRRLLGKSDGDLLKIVGIGAGAWGSVFAALLQDAYGRFREKVQIRIWRRAGRSVDR 79
Query: 169 ATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGFCLNMVDTPLCP 228
TAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGFCLNM+DTPLCP
Sbjct: 80 TTAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGFCLNMIDTPLCP 139
Query: 229 LKVVTNLQEAVWDADIVINGLPSTETREVFGEIGRYWKERIRPPVIISLAKGIEASIDPV 288
LKVVTNLQEAVWDADIV+NGLPSTETREVF EI +YWKERI PVIISLAKGIEAS+DP+
Sbjct: 140 LKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERISVPVIISLAKGIEASLDPI 199
Query: 289 PRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQP 348
PRIITPTQMIS+ATGVP ENILYLGGPNIASEIYNKEYANARICG++KWRKPLAKFLRQP
Sbjct: 200 PRIITPTQMISSATGVPTENILYLGGPNIASEIYNKEYANARICGSNKWRKPLAKFLRQP 259
Query: 349 HFIVWDNSDLITHEVMGGLKNIYAIGAGMVAALTNESATSKSVYFSLCTSEMIYITHLLA 408
HFIVWDNSDL+THEVMGGLKN+YAIGAGMVAALTNESATSKSVYF+ CTSEMI+ITHLL
Sbjct: 260 HFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLT 319
Query: 409 EDPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVHAFYE 468
E PEKLAGPLLADTYVTLLKGRNAWYGQ LAKGEL+ +MGDSIKGKG IQG+SAV AF+E
Sbjct: 320 EQPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELSPDMGDSIKGKGMIQGISAVGAFFE 379
Query: 469 LLSQSSLSVTHPEVKKLVAPVELCPILKTLYKILIKRELATDSILQAIRDESMYDPRERI 528
LLSQ SLSV HPE K VAP ELCPILK LY+ILIKREL+T ILQA+RDE+M DPRERI
Sbjct: 380 LLSQPSLSVQHPEENKQVAPAELCPILKRLYRILIKRELSTRDILQALRDETMNDPRERI 439
Query: 529 EMSQRQCLYRPSLLGLP 545
EM+Q YRPSLLG P
Sbjct: 440 EMAQSHAFYRPSLLGKP 456
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,828,126
Number of extensions: 789369
Number of successful extensions: 2079
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2079
Number of HSP's successfully gapped: 3
Length of query: 552
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 446
Effective length of database: 11,501,117
Effective search space: 5129498182
Effective search space used: 5129498182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)