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Os01g0939600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glycerol-3-phosphate dehydrogenase-like protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.72 (0.0351) R2 : 0.687
β1 : 0.863 (0.131) R2dD : 0.0297 R2D : 0.0841
β2 : 3.61 (0.136) R2dC : 1.37 R2C : -0.667
β3 : 5.59 (0.225) R2dE : 1.27 R2E : -0.715
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0436 (0.0779) R2dN8 : 0.00023 R2N8 : 0.00221
σ : 0.638
deviance : 187.61
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C
peak time of C : 23.9
E
wheather : temperature
threshold : 5.872
memory length : 616
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.2
open length of G : 18.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
187.09 0.643 6.75 0.483 2.88 5.02 -1.17 -1.75 -0.0768 23.6 9.932 629 20.6 18.4
187.7 0.638 6.71 0.755 2.94 5.07 -0.645 -- 0.023 23.9 9.256 615 21 18.4
187.92 0.638 6.72 0.877 3.52 5.55 -- 0.327 0.0519 23.9 6.499 621 21.2 18.2
187.61 0.638 6.72 0.863 3.61 5.59 -- -- 0.0436 23.9 5.872 616 21.2 18.1
227.74 0.703 6.7 0.152 -- 3.89 -- -1.9 -0.0402 -- -4.454 2407 23.5 20.5
423.69 0.965 6.52 1.73 1.05 -- -0.953 -- 0.735 21.8 -- -- -- --
427.17 0.968 6.52 1.77 1.05 -- -- -- 0.737 21.8 -- -- -- --
230.95 0.708 6.67 0.524 -- 3.89 -- -- -0.0204 -- -3.914 2430 23.6 20.4
202.56 0.663 6.75 -- 3.74 5.88 -- -- -0.105 0.00619 6.394 625 21.2 18.1
493.46 1.04 6.49 1.78 -- -- -- -- 0.736 -- -- -- -- --
509.32 1.06 6.56 -- 1.06 -- -- -- 0.54 21.9 -- -- -- --
237.42 0.718 6.67 -- -- 4.04 -- -- -0.0173 -- -3.736 2434 23.4 20.6
576.66 1.12 6.54 -- -- -- -- -- 0.539 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 202.28 temperature 10.0 720 > th dose dependent rect. 19 19
14 209.44 temperature 30.0 720 < th dose dependent rect. 18 18
28 212.34 temperature 20.0 720 > th dose dependent sin 8 NA
72 216.40 radiation 1.0 14400 > th dose independent rect. 18 13
78 216.86 temperature 30.0 720 < th dose dependent sin 9 NA
88 218.09 temperature 20.0 1440 > th dose dependent rect. 6 1
93 218.51 temperature 20.0 1440 > th dose dependent rect. 5 3
111 220.66 radiation 1.0 14400 > th dose independent rect. 5 2
113 220.68 radiation 1.0 14400 < th dose independent rect. 18 13
117 220.82 radiation 1.0 14400 < th dose independent rect. 5 2
125 221.12 temperature 10.0 1440 > th dose dependent rect. 4 5
130 221.27 temperature 10.0 1440 > th dose dependent rect. 5 3
136 221.62 radiation 1.0 14400 < th dose independent rect. 21 10
168 222.07 temperature 30.0 1440 < th dose dependent rect. 4 5
173 222.32 temperature 20.0 1440 > th dose dependent rect. 18 5
182 222.58 temperature 30.0 1440 < th dose dependent rect. 5 3
198 223.02 radiation 1.0 14400 < th dose dependent rect. 5 2
201 223.13 temperature 10.0 1440 > th dose dependent rect. 6 1
211 223.50 radiation 1.0 14400 > th dose independent rect. 18 21
228 223.82 temperature 20.0 1440 > th dose dependent sin 12 NA
234 223.93 temperature 15.0 270 > th dose dependent rect. 1 20
255 224.22 temperature 30.0 1440 < th dose dependent rect. 6 1
267 224.43 temperature 15.0 270 > th dose dependent rect. 2 17
285 224.80 humidity 90.0 43200 > th dose independent rect. 22 1
323 225.37 radiation 1.0 14400 < th dose dependent rect. 2 5
327 225.45 radiation 1.0 14400 > th dose independent rect. 11 20
334 225.51 radiation 1.0 14400 > th dose independent rect. 13 18
349 225.67 temperature 25.0 4320 < th dose independent rect. 4 11
352 225.70 radiation 1.0 43200 > th dose independent rect. 18 1
369 225.78 radiation 1.0 14400 > th dose independent sin 11 NA
377 225.87 radiation 1.0 14400 < th dose independent rect. 18 21
379 225.88 humidity 90.0 43200 > th dose dependent rect. 5 19
383 225.89 radiation 1.0 14400 < th dose dependent rect. 11 20
396 225.99 radiation 1.0 14400 < th dose dependent rect. 14 17
411 226.10 temperature 25.0 4320 > th dose independent rect. 4 11
413 226.10 radiation 1.0 14400 < th dose dependent rect. 21 10
438 226.29 radiation 1.0 14400 < th dose dependent rect. 18 23
457 226.45 radiation 1.0 14400 < th dose dependent rect. 5 14
463 226.49 radiation 1.0 14400 < th dose dependent rect. 5 18
474 226.57 humidity 90.0 43200 > th dose dependent rect. 11 13
496 226.70 radiation 1.0 14400 < th dose dependent rect. 5 12
506 226.78 precipitation 0.1 43200 < th dose independent rect. 6 1
507 226.78 precipitation 0.1 43200 < th dose dependent rect. 6 1
514 226.80 radiation 1.0 14400 < th dose dependent rect. 5 22
532 226.93 radiation 1.0 14400 < th dose dependent sin 0 NA
553 227.00 radiation 1.0 14400 < th dose dependent rect. 2 17
554 227.01 temperature 20.0 1440 > th dose dependent no NA NA
573 227.05 radiation 1.0 14400 < th dose dependent rect. 2 20
596 227.16 humidity 90.0 43200 > th dose independent rect. 6 18
611 227.19 humidity 90.0 43200 > th dose dependent rect. 4 15
612 227.20 radiation 1.0 14400 < th dose independent rect. 21 18
614 227.20 humidity 90.0 43200 > th dose dependent rect. 6 1
616 227.22 radiation 1.0 14400 < th dose independent rect. 23 16
631 227.27 radiation 1.0 14400 > th dose independent rect. 5 10
646 227.28 temperature 20.0 1440 > th dose dependent rect. 24 23
676 227.33 radiation 1.0 14400 < th dose dependent rect. 21 22
679 227.34 radiation 1.0 14400 < th dose independent rect. 5 10
699 227.37 radiation 1.0 14400 < th dose dependent rect. 14 23
701 227.38 radiation 1.0 14400 < th dose dependent no NA NA
718 227.42 humidity 90.0 43200 > th dose independent rect. 4 20
723 227.43 radiation 1.0 14400 > th dose independent no NA NA
725 227.43 radiation 1.0 14400 > th dose independent rect. 4 15
788 227.47 radiation 1.0 14400 > th dose independent rect. 13 23
808 227.56 humidity 90.0 43200 > th dose independent rect. 9 15
810 227.56 radiation 1.0 14400 < th dose independent rect. 11 20
820 227.58 humidity 90.0 43200 < th dose independent rect. 22 1
834 227.60 radiation 1.0 14400 < th dose independent rect. 9 22
866 227.78 precipitation 0.1 43200 > th dose independent rect. 6 1
868 227.78 precipitation 0.1 43200 > th dose dependent rect. 6 1
882 227.82 humidity 90.0 43200 > th dose dependent sin 19 NA
893 227.85 humidity 90.0 43200 < th dose independent rect. 18 1
904 227.90 radiation 1.0 14400 < th dose independent sin 11 NA
917 227.95 temperature 25.0 43200 < th dose independent rect. 13 1
923 227.96 radiation 1.0 14400 < th dose dependent rect. 10 9
938 228.02 humidity 90.0 43200 > th dose dependent rect. 22 1
948 228.05 radiation 1.0 14400 < th dose dependent rect. 10 12
950 228.06 radiation 1.0 14400 > th dose independent sin 1 NA
983 228.16 temperature 25.0 43200 > th dose independent rect. 13 1