BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0939600 Os01g0939600|AK068569
(456 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41540.1 | chr2:17326801-17328654 FORWARD LENGTH=463 761 0.0
AT3G07690.1 | chr3:2457232-2459378 FORWARD LENGTH=467 739 0.0
AT5G40610.1 | chr5:16265071-16267258 REVERSE LENGTH=401 67 2e-11
AT2G40690.1 | chr2:16974107-16976241 FORWARD LENGTH=421 62 8e-10
>AT2G41540.1 | chr2:17326801-17328654 FORWARD LENGTH=463
Length = 462
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/428 (85%), Positives = 401/428 (93%)
Query: 29 GKSDGDLLKIVGIGAGAWGSVFAALLQDAYGRFREKVQIRIWRRAGRSVDRTTAEHLFEV 88
GKS+ D L+IV +GAGAWGSVFAALLQ++YG FR+K QIRIWRRAGR+VDR TAEHLFEV
Sbjct: 35 GKSEKDPLRIVSVGAGAWGSVFAALLQESYGGFRDKFQIRIWRRAGRAVDRETAEHLFEV 94
Query: 89 INSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGFCLNMIDTPLCPLKVVTNLQE 148
INSRED+LRRLIRRCAYLKYVEARLGDRTLYADEIL+DGFCLNM+DTPLCPLKVVTNLQE
Sbjct: 95 INSREDILRRLIRRCAYLKYVEARLGDRTLYADEILKDGFCLNMVDTPLCPLKVVTNLQE 154
Query: 149 AVWDADIVVNGLPSTETREVFEEISKYWKERISVPVIISLAKGIEASLDPIPRIITPTQM 208
AVWDADIVVNGLPSTETREVFEEISKYWKERI+VP+IISL+KGIE +L+P+P IITPT+M
Sbjct: 155 AVWDADIVVNGLPSTETREVFEEISKYWKERITVPIIISLSKGIETALEPVPHIITPTKM 214
Query: 209 ISSATGVPTENILYLGGPNIASEIYNKEYANARICGSNKWRKPLAKFLRQPHFIVWDNSD 268
I ATGVP +N+LYLGGPNIA+EIYNKEYANARICG+ KWRKPLAKFLRQPHFIVWDNSD
Sbjct: 215 IHQATGVPIDNVLYLGGPNIAAEIYNKEYANARICGAAKWRKPLAKFLRQPHFIVWDNSD 274
Query: 269 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLTEQPEKLAGP 328
LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLL E+PEKLAGP
Sbjct: 275 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGP 334
Query: 329 LLADTYVTLLKGRNAWYGQMLAKGELSPDMGDSIKGKGMIQGISAVGAFFELLSQPSLSV 388
LLADTYVTLLKGRNAWYGQMLAKGE++ DMGDSI GKGMIQG+SAVGAF++LLSQ SLS+
Sbjct: 335 LLADTYVTLLKGRNAWYGQMLAKGEINRDMGDSISGKGMIQGVSAVGAFYQLLSQSSLSI 394
Query: 389 QHPEENKQVAPAELCPILKRLYRILIKRELSTRDILQALRDETMNDPRERIEMAQSHAFY 448
EE K VAP E CPILK LY+ILI RE ST+ ILQALRDET+NDPR+RIE+AQSHAFY
Sbjct: 395 LPSEEKKPVAPVESCPILKTLYKILITREQSTQAILQALRDETLNDPRDRIEIAQSHAFY 454
Query: 449 RPSLLGKP 456
RPSLLG+P
Sbjct: 455 RPSLLGQP 462
>AT3G07690.1 | chr3:2457232-2459378 FORWARD LENGTH=467
Length = 466
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/437 (80%), Positives = 386/437 (88%), Gaps = 10/437 (2%)
Query: 29 GKSDGDLLKIVGIGAGAWGSVFAALLQDAYGRFREKVQIRIWRRAGRSVDRTTAEHLFEV 88
GK+D D L+IVG+GAGAWGSVF A+LQ+ YG+FR KV +RIWRR GR++D+ TAEHLFEV
Sbjct: 28 GKADDDPLRIVGVGAGAWGSVFIAMLQENYGKFRGKVSVRIWRRGGRAIDKATAEHLFEV 87
Query: 89 INSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGFCLNMIDTPLCPLKVVTNLQE 148
INSRE++LRRLIRRCAYLKYVEARLGDR LYADEIL+DGFCLNMI+TPLCPLKVVTNLQE
Sbjct: 88 INSREELLRRLIRRCAYLKYVEARLGDRVLYADEILKDGFCLNMIETPLCPLKVVTNLQE 147
Query: 149 AVWDADIVVNGLPSTETREVFEEISKYWKERISVPVIISLAKGIEASLDPIPRIITPTQM 208
AVWDADIV+NGLPSTET +VF EISKYWKER++ PVIISLAKG+EA +P PRI+TPTQM
Sbjct: 148 AVWDADIVINGLPSTETFQVFNEISKYWKERVNAPVIISLAKGVEAEFEPHPRIVTPTQM 207
Query: 209 ISSATGVPTENILYLGGPNIASEIYNKEYANARICGSNKWRKPLAKFLRQPHFIVWDNSD 268
I ATG+P ENILYLGGPNIASE+YNKEYANARICGS KWRKPL KFLRQ HFIVWDNSD
Sbjct: 208 IHRATGIPLENILYLGGPNIASEVYNKEYANARICGSEKWRKPLGKFLRQSHFIVWDNSD 267
Query: 269 LVTHEVMGGLKNVYAIGA----------GMVAALTNESATSKSVYFAHCTSEMIFITHLL 318
L+THEVMGGLKNVYAIGA GMVA LT ESATSKSVYFAHCTSEMIFITHLL
Sbjct: 268 LITHEVMGGLKNVYAIGAVFVLAFLYSTGMVATLTKESATSKSVYFAHCTSEMIFITHLL 327
Query: 319 TEQPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELSPDMGDSIKGKGMIQGISAVGAFF 378
++PEKLAGPLLADTYVTLLKGRNAWYGQ LAKGELS +MGDSIKGKGMIQG+SAV AFF
Sbjct: 328 AKEPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELSLEMGDSIKGKGMIQGVSAVKAFF 387
Query: 379 ELLSQPSLSVQHPEENKQVAPAELCPILKRLYRILIKRELSTRDILQALRDETMNDPRER 438
ELL+Q SLS+QHPEE K V PAELCPILK LYRILI RE S IL+ALRDETMNDPRE
Sbjct: 388 ELLNQSSLSLQHPEEGKPVTPAELCPILKMLYRILITREFSCEAILEALRDETMNDPREL 447
Query: 439 IEMAQSHAFYRPSLLGK 455
IE+A SH F++P LLG+
Sbjct: 448 IEIAHSHLFFQPWLLGQ 464
>AT5G40610.1 | chr5:16265071-16267258 REVERSE LENGTH=401
Length = 400
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 103/404 (25%), Positives = 169/404 (41%), Gaps = 81/404 (20%)
Query: 29 GKSDGDLLKIVGIGAGAWGSVFAALLQDAYGR---FREKVQIRIWRRAGRSVDRTTAEHL 85
G +D K+ +G+G WGSV A L+ + F ++V++ ++ E L
Sbjct: 48 GCNDDSKSKVTVVGSGNWGSVAAKLIASNALKLPSFHDEVRMWVFEEV-----LPNGEKL 102
Query: 86 FEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGFCLNMIDTPLCPLKVVTN 145
+VIN + ++ YL + +LG R + AD +
Sbjct: 103 NDVINKTNENVK-------YLPGI--KLG-RNVVAD----------------------PD 130
Query: 146 LQEAVWDADIVVNGLPSTETREVFEEISKYWKERISVPV-IISLAKGIEASLDPIPRIIT 204
L+ AV DA+++V P + + I K +I+ V ISL KG+E + P +I+
Sbjct: 131 LENAVKDANMLVFVTP----HQFMDGICKKLDGKITGDVEAISLVKGMEVKKEG-PCMIS 185
Query: 205 PTQMISSATGVPTENILYLGGPNIASEIYNKEYANARIC--GSNKWRKPLAKFLRQPHFI 262
+IS G+ N L G NIA+EI ++++ A + GS + + P+F+
Sbjct: 186 --SLISKQLGI---NCCVLMGANIANEIAVEKFSEATVGYRGSREIADTWVQLFSTPYFM 240
Query: 263 VWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLL---T 319
V D+ E+ G LKNV AI AG V L + T K+ EM ++ LL
Sbjct: 241 VTPVHDVEGVELCGTLKNVVAIAAGFVDGLEMGNNT-KAAIMRIGLREMKALSKLLFPSV 299
Query: 320 EQPEKLAGPLLADTYVTLLKGRNAWYGQMLAKG-------ELSPDMGDSIKGKGMIQGIS 372
+ +AD T L GRN + AK EL +M ++G+ +QG+S
Sbjct: 300 KDSTFFESCGVADVITTCLGGRNRRVAEAFAKSRGKRSFDELEAEM---LQGQ-KLQGVS 355
Query: 373 AVGAFFELLSQPSLSVQHPEENKQVAPAELCPILKRLYRILIKR 416
+E+L K E+ P+ +++I R
Sbjct: 356 TAREVYEVL-------------KHCGWLEMFPLFSTVHQICTGR 386
>AT2G40690.1 | chr2:16974107-16976241 FORWARD LENGTH=421
Length = 420
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 21/244 (8%)
Query: 144 TNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERISVPVIISLAKGIEASLDPIPRII 203
T+ + A+ DAD ++ +P + E I+ Y + ISL+KG+E + +
Sbjct: 151 TDAKAALLDADYCLHAVPVQFSSSFLEGIADYVDPGLP---FISLSKGLE-----LNTLR 202
Query: 204 TPTQMISSATGVPTENILYLGGPNIASEIYNKEYANARICGSN--KWRKPLAKFLRQPHF 261
+Q+I A P + + L GP+ A E+ N A + S K + + L +
Sbjct: 203 MMSQIIPIALKNPRQPFVALSGPSFALELMN-NLPTAMVVASKDKKLANAVQQLLASSYL 261
Query: 262 IVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLTEQ 321
+ +SD+ E+ G LKNV AI AG+V + N S + + SE+ ++ + +
Sbjct: 262 RINTSSDVTGVEIAGALKNVLAIAAGIVDGM-NLGNNSMAALVSQGCSEIRWLATKMGAK 320
Query: 322 PEKL-----AGPLLADTYVTLLKGRNAWYGQMLAKGELSPDMGDSIKGKGMIQGISAVGA 376
P + G ++ +V L RN G L GE D+ S+ + +G++ GA
Sbjct: 321 PTTITGLSGTGDIMLTCFVNL--SRNRTVGVRLGSGETLDDILTSM--NQVAEGVATAGA 376
Query: 377 FFEL 380
L
Sbjct: 377 VIAL 380
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,969,196
Number of extensions: 368472
Number of successful extensions: 923
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 924
Number of HSP's successfully gapped: 4
Length of query: 456
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 354
Effective length of database: 8,310,137
Effective search space: 2941788498
Effective search space used: 2941788498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)