BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0482600 Os05g0482600|AK120343
(455 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0482600 WD40-like domain containing protein 939 0.0
Os01g0817800 WD40-like domain containing protein 764 0.0
Os02g0781800 WD40-like domain containing protein 309 4e-84
AK073132 135 6e-32
Os12g0498300 Hypothetical protein 86 5e-17
Os02g0159400 Hypothetical protein 68 1e-11
>Os05g0482600 WD40-like domain containing protein
Length = 455
Score = 939 bits (2427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/455 (100%), Positives = 455/455 (100%)
Query: 1 MEARRISASPRPCSGRRVVARKRPRHEAAVNSVRKLQRREISSCRDRAFSMSAAQERFRN 60
MEARRISASPRPCSGRRVVARKRPRHEAAVNSVRKLQRREISSCRDRAFSMSAAQERFRN
Sbjct: 1 MEARRISASPRPCSGRRVVARKRPRHEAAVNSVRKLQRREISSCRDRAFSMSAAQERFRN 60
Query: 61 IQLQEEFDTHDPKENSLLLPYLRKRSKIIEIVAARDIVFALSQSGVCAAFSRETNRRICF 120
IQLQEEFDTHDPKENSLLLPYLRKRSKIIEIVAARDIVFALSQSGVCAAFSRETNRRICF
Sbjct: 61 IQLQEEFDTHDPKENSLLLPYLRKRSKIIEIVAARDIVFALSQSGVCAAFSRETNRRICF 120
Query: 121 LNGSPDEVIRSLFYNKNNESLITVSVYGSENFSALRCRTTRIEYIRRAKPDAGFPLFESE 180
LNGSPDEVIRSLFYNKNNESLITVSVYGSENFSALRCRTTRIEYIRRAKPDAGFPLFESE
Sbjct: 121 LNGSPDEVIRSLFYNKNNESLITVSVYGSENFSALRCRTTRIEYIRRAKPDAGFPLFESE 180
Query: 181 SLKWPGFVEFDDVNGKVLTYSAQDSTYKVFDLKNYTLLYSISDKNVQEIKISPGIMLLIY 240
SLKWPGFVEFDDVNGKVLTYSAQDSTYKVFDLKNYTLLYSISDKNVQEIKISPGIMLLIY
Sbjct: 181 SLKWPGFVEFDDVNGKVLTYSAQDSTYKVFDLKNYTLLYSISDKNVQEIKISPGIMLLIY 240
Query: 241 TRTSSSVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEGENLQILDVRNF 300
TRTSSSVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEGENLQILDVRNF
Sbjct: 241 TRTSSSVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEGENLQILDVRNF 300
Query: 301 QLTEVSRTEFMTPSAFIFLYELQLFLTFRNRSVAVWNFRGELVTSFEDHLLWHPDCNTNN 360
QLTEVSRTEFMTPSAFIFLYELQLFLTFRNRSVAVWNFRGELVTSFEDHLLWHPDCNTNN
Sbjct: 301 QLTEVSRTEFMTPSAFIFLYELQLFLTFRNRSVAVWNFRGELVTSFEDHLLWHPDCNTNN 360
Query: 361 IYITSDQDLIISYCKADSNDSSSEENAGSINISNILTGKCLAKIKASDLCKQKKAWKFQS 420
IYITSDQDLIISYCKADSNDSSSEENAGSINISNILTGKCLAKIKASDLCKQKKAWKFQS
Sbjct: 361 IYITSDQDLIISYCKADSNDSSSEENAGSINISNILTGKCLAKIKASDLCKQKKAWKFQS 420
Query: 421 TALEALEDITALYYDEERDEIYTGNRQGLVHVWSN 455
TALEALEDITALYYDEERDEIYTGNRQGLVHVWSN
Sbjct: 421 TALEALEDITALYYDEERDEIYTGNRQGLVHVWSN 455
>Os01g0817800 WD40-like domain containing protein
Length = 454
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/455 (84%), Positives = 410/455 (90%), Gaps = 1/455 (0%)
Query: 1 MEARRISASPRPCSGRRVVARKRPRHEAAVNSVRKLQRREISSCRDRAFSMSAAQERFRN 60
MEARR+SA+PRP RRV+ARKR R EA NS RKLQRREIS+ RAFS S +ERFRN
Sbjct: 1 MEARRVSANPRPSCVRRVLARKRRRPEATANSARKLQRREISALPCRAFSASTTRERFRN 60
Query: 61 IQLQEEFDTHDPKENSLLLPYLRKRSKIIEIVAARDIVFALSQSGVCAAFSRETNRRICF 120
IQLQEEFDTHDPKE LLPYL KRS+IIEIV A DI+FALSQSGVCAAFSR +N+RICF
Sbjct: 61 IQLQEEFDTHDPKEMGSLLPYLMKRSEIIEIVGASDIIFALSQSGVCAAFSRVSNQRICF 120
Query: 121 LNGSPDEVIRSLFYNKNNESLITVSVYGSENFSALRCRTTRIEYIRRAKPDAGFPLFESE 180
LNG PDEVIRSLFYNKNN+SLITVSVYGSENFSALRCRTTRIEYIRR KPDAGFPLFE+E
Sbjct: 121 LNGRPDEVIRSLFYNKNNDSLITVSVYGSENFSALRCRTTRIEYIRRGKPDAGFPLFETE 180
Query: 181 SLKWPGFVEFDDVNGKVLTYSAQDSTYKVFDLKNYTLLYSISDKNVQEIKISPGIMLLIY 240
SLKWPGFVEFDDVNGKVLTYSAQDSTYKVFDLKNYTLLY+ISDKNVQEIKISPGIMLLIY
Sbjct: 181 SLKWPGFVEFDDVNGKVLTYSAQDSTYKVFDLKNYTLLYTISDKNVQEIKISPGIMLLIY 240
Query: 241 TRTSSSVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEGENLQILDVRNF 300
+R +PL ILSIEDG LKSF HLLHRNKKVDFIEQFNEKLL+KQEGENLQILDVRNF
Sbjct: 241 SRKKGCIPLDILSIEDGKRLKSFKHLLHRNKKVDFIEQFNEKLLIKQEGENLQILDVRNF 300
Query: 301 QLTEVSRTEFMTPSAFIFLYELQLFLTFRNRSVAVWNFRGELVTSFEDHLLWHPDCNTNN 360
Q EVSR+EF+TPSAFIFLYE+QLFLTFR+RSV+VWNFRGELVTSFEDH+LWHPDCNTN+
Sbjct: 301 QSIEVSRSEFVTPSAFIFLYEMQLFLTFRSRSVSVWNFRGELVTSFEDHMLWHPDCNTNS 360
Query: 361 IYITSDQDLIISYCKADSNDSSSEENAGSINISNILTGKCLAKIKASDLCKQKKAWKFQS 420
IYITS+QDLIISYCKAD ND SSEENA SINIS ILTGKCLAKIKA +L KQ+ + KFQS
Sbjct: 361 IYITSNQDLIISYCKADPNDPSSEENACSINISEILTGKCLAKIKAGNLNKQRVS-KFQS 419
Query: 421 TALEALEDITALYYDEERDEIYTGNRQGLVHVWSN 455
T EAL DITALYYDEER+EIYTGNR GLVHVWSN
Sbjct: 420 TPSEALGDITALYYDEEREEIYTGNRLGLVHVWSN 454
>Os02g0781800 WD40-like domain containing protein
Length = 234
Score = 309 bits (791), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 157/234 (67%), Positives = 185/234 (79%), Gaps = 14/234 (5%)
Query: 236 MLLIYTRTSSSVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEGENLQIL 295
ML+IY ++++ VPLKILSIEDGT LK+F LLHR++KVDFIEQFNEKLLVKQ+ ENLQI+
Sbjct: 1 MLVIYQKSANHVPLKILSIEDGTPLKTFTQLLHRSRKVDFIEQFNEKLLVKQDKENLQII 60
Query: 296 DVRNFQLTEVSRTEFMTPSAFIFLYELQLFLTFRNRSVAVWNFRGELVTSFEDHLLWHPD 355
DVRN L EV++TEFMTPSAFIFLYE LFLTF NR+VA WNFRGELVTSF+DH LWH +
Sbjct: 61 DVRNSNLIEVNKTEFMTPSAFIFLYENNLFLTFCNRTVAAWNFRGELVTSFDDHELWHSN 120
Query: 356 CNTNNIYITSDQDLIISYCKA--DSNDSSSEEN----AGSINISNILTGKCLAKIKASD- 408
CNTNNIYIT+DQDLIISYCKA + DS E GSIN+SNI TGKC+AKI D
Sbjct: 121 CNTNNIYITADQDLIISYCKASKEVRDSGGCEGIAPPTGSINMSNIFTGKCVAKISPLDP 180
Query: 409 ---LCKQKKA----WKFQSTALEALEDITALYYDEERDEIYTGNRQGLVHVWSN 455
+ +K+ +ST +ALEDITAL+YDE+R+EIYTGN +GLVHVWSN
Sbjct: 181 TLTIAPRKRGDSSRSTIRSTVSDALEDITALFYDEDRNEIYTGNSKGLVHVWSN 234
>AK073132
Length = 184
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/68 (97%), Positives = 66/68 (97%)
Query: 1 MEARRISASPRPCSGRRVVARKRPRHEAAVNSVRKLQRREISSCRDRAFSMSAAQERFRN 60
MEARRISASPRPCSGRRVVARKRPRHEAAVNSVRKLQRREISSCRDRAFSMSAAQERFRN
Sbjct: 1 MEARRISASPRPCSGRRVVARKRPRHEAAVNSVRKLQRREISSCRDRAFSMSAAQERFRN 60
Query: 61 IQLQEEFD 68
IQLQ E D
Sbjct: 61 IQLQVEDD 68
>Os12g0498300 Hypothetical protein
Length = 127
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 37/42 (88%), Positives = 39/42 (92%)
Query: 164 YIRRAKPDAGFPLFESESLKWPGFVEFDDVNGKVLTYSAQDS 205
YIRR + DAGFPLFE+ESLKWPGFVEFDDVNGKVLTYSAQD
Sbjct: 52 YIRRNQLDAGFPLFETESLKWPGFVEFDDVNGKVLTYSAQDG 93
>Os02g0159400 Hypothetical protein
Length = 263
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 92/171 (53%), Gaps = 13/171 (7%)
Query: 25 RHEAAVNSVRKLQRREIS-SCRDRAFSMSA--------AQERFRNIQLQEE-FDTHDPKE 74
+ + + ++V KLQ REI C R +S + E F I+ + FD + K+
Sbjct: 94 QRKKSCSTVMKLQFREIGLHCSLRTCGISRFVPTPSTFSHEVFSKIKNNKVVFDIYRCKD 153
Query: 75 --NSLLLPYLRKRSKIIEIVAARDIVFALSQSGVCAAFSRETNRRICFLNGSPDEVIRSL 132
L P +RKRS +++I+ +D+V + SG+ SR TN+ I LN DE+I S+
Sbjct: 154 VIRHLERP-IRKRSAVLQILPLKDLVAVVLCSGLSFLLSRVTNKMISILNRYDDEIIVSI 212
Query: 133 FYNKNNESLITVSVYGSENFSALRCRTTRIEYIRRAKPDAGFPLFESESLK 183
FYNK ++S+IT S + + + +T +E IR K + G +FESE++K
Sbjct: 213 FYNKEDKSVITTSSRLFDGCMSRQVTSTPLECIRSNKQNNGQQIFESENIK 263
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,220,406
Number of extensions: 552591
Number of successful extensions: 1497
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1493
Number of HSP's successfully gapped: 6
Length of query: 455
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 351
Effective length of database: 11,605,545
Effective search space: 4073546295
Effective search space used: 4073546295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)