Os05g0482600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0482600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : WD40-like domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.39 | 0.217 | 11.9 | -0.655 | 0.839 | 0.697 | -0.768 | -1.95 | 0.0285 | 23.9 | 25.5 | 5114 | -- | -- |
| 22.97 | 0.223 | 11.8 | -0.115 | 0.857 | 0.563 | -0.831 | -- | 0.0595 | 23.8 | 23.1 | 3637 | -- | -- |
| 23.86 | 0.228 | 11.9 | -0.658 | 0.832 | 0.702 | -- | -2.09 | 0.0242 | 23.8 | 25.6 | 5195 | -- | -- |
| 25.85 | 0.237 | 11.8 | -0.0988 | 0.852 | 0.559 | -- | -- | 0.0696 | 23.7 | 23.06 | 3633 | -- | -- |
| 64.45 | 0.374 | 11.9 | -0.501 | -- | 0.907 | -- | -1.62 | 0.0161 | -- | 25.24 | 3749 | -- | -- |
| 34.35 | 0.275 | 11.8 | 0.153 | 0.898 | -- | -0.797 | -- | 0.294 | 23.8 | -- | -- | -- | -- |
| 37.09 | 0.285 | 11.8 | 0.185 | 0.902 | -- | -- | -- | 0.297 | 23.7 | -- | -- | -- | -- |
| 63.78 | 0.372 | 11.8 | -0.137 | -- | 0.839 | -- | -- | 0.0386 | -- | 25.59 | 2314 | -- | -- |
| 26.02 | 0.238 | 11.8 | -- | 0.847 | 0.557 | -- | -- | 0.0773 | 23.7 | 23 | 3633 | -- | -- |
| 88.23 | 0.439 | 11.8 | 0.211 | -- | -- | -- | -- | 0.308 | -- | -- | -- | -- | -- |
| 38 | 0.288 | 11.8 | -- | 0.904 | -- | -- | -- | 0.277 | 23.7 | -- | -- | -- | -- |
| 63.83 | 0.372 | 11.8 | -- | -- | 0.829 | -- | -- | 0.0661 | -- | 25.57 | 2321 | -- | -- |
| 89.41 | 0.441 | 11.8 | -- | -- | -- | -- | -- | 0.285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.77 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 2 | 20.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 5 | 21.14 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 29 | 21.47 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 14 |
| 35 | 21.50 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 51 | 21.55 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 59 | 21.57 | temperature | 25 | 4320 | > th | dose dependent | sin | 15 | NA |
| 90 | 21.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 192 | 21.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 21 |
| 244 | 21.90 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 21 |
| 245 | 21.90 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 255 | 21.90 | temperature | 25 | 4320 | > th | dose dependent | rect. | 1 | 21 |
| 294 | 21.92 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 21 |
| 397 | 21.99 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 20 |
| 464 | 22.05 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 487 | 22.07 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 498 | 22.07 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 512 | 22.08 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 518 | 22.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 11 |
| 621 | 22.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 23 |
| 630 | 22.16 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 631 | 22.16 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 9 |
| 637 | 22.16 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 728 | 22.22 | temperature | 25 | 4320 | > th | dose independent | sin | 18 | NA |
| 807 | 22.27 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 13 |
| 819 | 22.28 | temperature | 25 | 4320 | < th | dose independent | sin | 18 | NA |
| 901 | 22.33 | temperature | 25 | 4320 | > th | dose independent | sin | 4 | NA |
| 944 | 22.35 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 14 |