Os12g0498300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0498300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.55 | 0.179 | 12 | 0.438 | 0.401 | 0.337 | 0.449 | -1.03 | 0.164 | 3.05 | 30.26 | 93 | -- | -- |
| 15.52 | 0.183 | 12 | 0.287 | 0.389 | 0.378 | 0.162 | -- | 0.137 | 2.81 | 29.8 | 166 | -- | -- |
| 15.01 | 0.18 | 12 | 0.402 | 0.403 | 0.403 | -- | -0.994 | 0.145 | 2.76 | 38.05 | 208 | -- | -- |
| 15.55 | 0.184 | 12 | 0.27 | 0.391 | 0.36 | -- | -- | 0.121 | 2.84 | 30.1 | 164 | -- | -- |
| 21.08 | 0.214 | 12 | 0.479 | -- | 0.845 | -- | -0.802 | 0.212 | -- | 33.72 | 67 | -- | -- |
| 17.15 | 0.194 | 12 | 0.178 | 0.502 | -- | 0.168 | -- | 0.0515 | 3.04 | -- | -- | -- | -- |
| 17.24 | 0.194 | 12 | 0.174 | 0.503 | -- | -- | -- | 0.0505 | 3.04 | -- | -- | -- | -- |
| 21.55 | 0.217 | 12 | 0.352 | -- | 0.709 | -- | -- | 0.194 | -- | 30.1 | 164 | -- | -- |
| 17.17 | 0.194 | 12 | -- | 0.429 | 0.241 | -- | -- | 0.071 | 3.2 | 30.1 | 164 | -- | -- |
| 31.73 | 0.263 | 12 | 0.196 | -- | -- | -- | -- | 0.0636 | -- | -- | -- | -- | -- |
| 18.04 | 0.199 | 12 | -- | 0.507 | -- | -- | -- | 0.0311 | 3.04 | -- | -- | -- | -- |
| 24.59 | 0.231 | 12 | -- | -- | 0.737 | -- | -- | 0.125 | -- | 49.91 | 28 | -- | -- |
| 32.75 | 0.267 | 12 | -- | -- | -- | -- | -- | 0.0418 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 2 | 13.61 | humidity | 90 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 3 | 13.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 4 | 13.62 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 7 | 13.63 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 21 | 13.69 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 24 | 13.70 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 44 | 13.74 | humidity | 90 | 14400 | > th | dose independent | sin | 9 | NA |
| 67 | 13.78 | humidity | 90 | 14400 | < th | dose independent | sin | 8 | NA |
| 71 | 13.78 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 84 | 13.80 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 90 | 13.80 | temperature | 10 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 98 | 13.83 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 99 | 13.83 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 103 | 13.84 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 123 | 13.86 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 148 | 13.88 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 149 | 13.88 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 14 |
| 215 | 13.94 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 220 | 13.94 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 9 |
| 257 | 13.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 270 | 13.97 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 7 |
| 427 | 14.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 542 | 14.07 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 22 |
| 574 | 14.09 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 614 | 14.10 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 726 | 14.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 754 | 14.16 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 786 | 14.17 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 790 | 14.18 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 822 | 14.20 | radiation | 10 | 4320 | > th | dose independent | rect. | 17 | 13 |
| 848 | 14.21 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 863 | 14.22 | radiation | 10 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 910 | 14.23 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 922 | 14.24 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 932 | 14.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 970 | 14.26 | humidity | 90 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 971 | 14.26 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 972 | 14.26 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 23 |
| 973 | 14.26 | humidity | 70 | 43200 | < th | dose dependent | rect. | 9 | 1 |