BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0498300 Os12g0498300|016-038-A02
         (127 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38630.1  | chr2:16154283-16156302 REVERSE LENGTH=468           85   1e-17
AT3G54190.1  | chr3:20061759-20063880 REVERSE LENGTH=468           80   2e-16

>AT2G38630.1 | chr2:16154283-16156302 REVERSE LENGTH=468
          Length = 467

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/41 (90%), Positives = 38/41 (92%)

Query: 52  YIRRNQLDAGFPLFETESLKWPGFVEFDDVNGKVLTYSAQD 92
           YI R Q DAGFPLFE+ESLKWPGFVEFDDVNGKVLTYSAQD
Sbjct: 167 YILRGQADAGFPLFESESLKWPGFVEFDDVNGKVLTYSAQD 207



>AT3G54190.1 | chr3:20061759-20063880 REVERSE LENGTH=468
          Length = 467

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/41 (87%), Positives = 37/41 (90%)

Query: 52  YIRRNQLDAGFPLFETESLKWPGFVEFDDVNGKVLTYSAQD 92
           YI R Q DAGF LFE+ESLKWPGFVEFDDVNGKVLTYSAQD
Sbjct: 165 YILRGQPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 205



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.141    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,630,493
Number of extensions: 100237
Number of successful extensions: 296
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 2
Length of query: 127
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 40
Effective length of database: 8,721,377
Effective search space: 348855080
Effective search space used: 348855080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 105 (45.1 bits)