BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0481700 Os05g0481700|J023121F16
(235 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0481700 Conserved hypothetical protein 387 e-108
Os05g0315200 Conserved hypothetical protein 79 2e-15
Os11g0118800 Similar to Expressed protein-like protein 70 1e-12
>Os05g0481700 Conserved hypothetical protein
Length = 235
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/235 (84%), Positives = 198/235 (84%)
Query: 1 MQIRQQLETLLAEKARLANENTVYARENRFLREIVEFHQLNMQXXXXXXXXXXXXXXXXX 60
MQIRQQLETLLAEKARLANENTVYARENRFLREIVEFHQLNMQ
Sbjct: 1 MQIRQQLETLLAEKARLANENTVYARENRFLREIVEFHQLNMQDVVDLDDEDMAGDGDGE 60
Query: 61 XXXXXHQQYGCHLRXXXXXXXXXXXXXXXTPPQSPLGHAGRMGMSRSNSRAAESPTMRRS 120
HQQYGCHLR TPPQSPLGHAGRMGMSRSNSRAAESPTMRRS
Sbjct: 61 EGDDDHQQYGCHLRAHEAAHGLWAGGGLGTPPQSPLGHAGRMGMSRSNSRAAESPTMRRS 120
Query: 121 LKEENVDEPETPPTRRSLKEKADVDAPPETPPTRRSLKEADVDEPDTPPTRRSIKEDADD 180
LKEENVDEPETPPTRRSLKEKADVDAPPETPPTRRSLKEADVDEPDTPPTRRSIKEDADD
Sbjct: 121 LKEENVDEPETPPTRRSLKEKADVDAPPETPPTRRSLKEADVDEPDTPPTRRSIKEDADD 180
Query: 181 APETPTTKQDIGSPETATTPARRSSNDDLGAAETTTPTRRSFKDDNGVTEMKNEH 235
APETPTTKQDIGSPETATTPARRSSNDDLGAAETTTPTRRSFKDDNGVTEMKNEH
Sbjct: 181 APETPTTKQDIGSPETATTPARRSSNDDLGAAETTTPTRRSFKDDNGVTEMKNEH 235
>Os05g0315200 Conserved hypothetical protein
Length = 419
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 39/41 (95%)
Query: 3 IRQQLETLLAEKARLANENTVYARENRFLREIVEFHQLNMQ 43
IR QLETLLAEKARLA+EN+VYARENRFLREIVE+HQL MQ
Sbjct: 303 IRLQLETLLAEKARLAHENSVYARENRFLREIVEYHQLTMQ 343
>Os11g0118800 Similar to Expressed protein-like protein
Length = 372
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 35/38 (92%)
Query: 3 IRQQLETLLAEKARLANENTVYARENRFLREIVEFHQL 40
IR QLETLLAEK+RLA EN++YARENRFLREIV+FHQ
Sbjct: 249 IRVQLETLLAEKSRLAQENSMYARENRFLREIVDFHQF 286
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.308 0.124 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,185,486
Number of extensions: 400471
Number of successful extensions: 2514
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2499
Number of HSP's successfully gapped: 3
Length of query: 235
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 137
Effective length of database: 11,918,829
Effective search space: 1632879573
Effective search space used: 1632879573
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 154 (63.9 bits)