Os05g0481700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0481700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 193.51 | 0.654 | 3.04 | 0.141 | 0.215 | -0.865 | -1.15 | 1.01 | 0.291 | 1.38 | 24.4 | 1513 | -- | -- |
| 194.05 | 0.649 | 3.08 | -0.151 | 0.259 | -0.752 | -1.07 | -- | 0.219 | 0.825 | 23.3 | 1960 | -- | -- |
| 198.74 | 0.657 | 3.04 | 0.193 | 0.231 | -0.851 | -- | 1.02 | 0.295 | 1.91 | 24.3 | 1505 | -- | -- |
| 198.93 | 0.657 | 3.09 | -0.167 | 0.214 | -0.741 | -- | -- | 0.176 | 1.42 | 23.3 | 1742 | -- | -- |
| 201.68 | 0.661 | 3.04 | 0.195 | -- | -0.841 | -- | 1 | 0.301 | -- | 24.25 | 1530 | -- | -- |
| 217.49 | 0.691 | 3.16 | -0.503 | 0.19 | -- | -1.14 | -- | -0.136 | 1.28 | -- | -- | -- | -- |
| 222.8 | 0.699 | 3.15 | -0.464 | 0.195 | -- | -- | -- | -0.13 | 1.83 | -- | -- | -- | -- |
| 201.47 | 0.661 | 3.08 | -0.151 | -- | -0.745 | -- | -- | 0.193 | -- | 23.2 | 1740 | -- | -- |
| 199.49 | 0.658 | 3.07 | -- | 0.205 | -0.788 | -- | -- | 0.218 | 1.54 | 23.3 | 1742 | -- | -- |
| 225.1 | 0.701 | 3.15 | -0.456 | -- | -- | -- | -- | -0.126 | -- | -- | -- | -- | -- |
| 228.47 | 0.707 | 3.14 | -- | 0.187 | -- | -- | -- | -0.0786 | 1.76 | -- | -- | -- | -- |
| 202.01 | 0.662 | 3.07 | -- | -- | -0.779 | -- | -- | 0.223 | -- | 23.24 | 1742 | -- | -- |
| 230.58 | 0.709 | 3.14 | -- | -- | -- | -- | -- | -0.0752 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 189.99 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 4 | 190.35 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 5 | 190.72 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 11 | 191.38 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 12 | 191.46 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 38 | 192.10 | temperature | 25 | 1440 | < th | dose independent | sin | 23 | NA |
| 41 | 192.14 | temperature | 25 | 1440 | > th | dose independent | sin | 23 | NA |
| 55 | 192.37 | temperature | 25 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 73 | 192.51 | temperature | 25 | 1440 | > th | dose independent | rect. | 4 | 16 |
| 172 | 193.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 224 | 193.59 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 293 | 194.08 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 315 | 194.24 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 429 | 194.89 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 439 | 194.96 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 440 | 194.98 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 457 | 195.13 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 463 | 195.16 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 466 | 195.18 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 473 | 195.19 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 475 | 195.20 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 476 | 195.20 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 482 | 195.22 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 489 | 195.26 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 501 | 195.35 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 514 | 195.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 592 | 195.82 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 593 | 195.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 618 | 195.95 | wind | 3 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 665 | 196.13 | temperature | 25 | 1440 | < th | dose dependent | sin | 21 | NA |
| 677 | 196.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 11 |
| 682 | 196.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 683 | 196.20 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 687 | 196.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 15 |
| 727 | 196.29 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 774 | 196.38 | wind | 3 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 775 | 196.38 | temperature | 15 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 796 | 196.43 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 2 |
| 798 | 196.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 843 | 196.54 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 4 |
| 854 | 196.58 | temperature | 15 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 887 | 196.64 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 893 | 196.64 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 909 | 196.68 | temperature | 15 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 923 | 196.69 | temperature | 10 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 966 | 196.77 | wind | 3 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 988 | 196.82 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 997 | 196.83 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 2 |