BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0481700 Os05g0481700|J023121F16
(235 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G30050.1 | chr1:10543177-10544418 FORWARD LENGTH=390 79 3e-15
AT5G01970.1 | chr5:373014-374651 REVERSE LENGTH=352 78 4e-15
AT2G30530.1 | chr2:13009071-13010867 FORWARD LENGTH=372 68 4e-12
AT4G02800.1 | chr4:1250126-1251478 FORWARD LENGTH=334 55 4e-08
>AT1G30050.1 | chr1:10543177-10544418 FORWARD LENGTH=390
Length = 389
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/41 (85%), Positives = 39/41 (95%)
Query: 3 IRQQLETLLAEKARLANENTVYARENRFLREIVEFHQLNMQ 43
IR QLETLLAEKARLA+EN++YARENRFLREIVE+HQL MQ
Sbjct: 248 IRLQLETLLAEKARLAHENSIYARENRFLREIVEYHQLTMQ 288
>AT5G01970.1 | chr5:373014-374651 REVERSE LENGTH=352
Length = 351
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/41 (85%), Positives = 39/41 (95%)
Query: 3 IRQQLETLLAEKARLANENTVYARENRFLREIVEFHQLNMQ 43
IR QLE+LLAEKARLA+EN+VYARENRFLREIVE+HQL MQ
Sbjct: 251 IRLQLESLLAEKARLAHENSVYARENRFLREIVEYHQLTMQ 291
>AT2G30530.1 | chr2:13009071-13010867 FORWARD LENGTH=372
Length = 371
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 36/41 (87%)
Query: 3 IRQQLETLLAEKARLANENTVYARENRFLREIVEFHQLNMQ 43
+R QLETLLAEKARLA+EN++Y REN +LR +VE+HQL MQ
Sbjct: 290 VRLQLETLLAEKARLAHENSIYTRENLYLRGVVEYHQLTMQ 330
>AT4G02800.1 | chr4:1250126-1251478 FORWARD LENGTH=334
Length = 333
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 3 IRQQLETLLAEKARLANENTVYARENRFLREIVEFHQLNMQ 43
+R QLE LLAEKARLANEN REN+ L ++VE+HQ+ Q
Sbjct: 239 VRLQLEVLLAEKARLANENANLVRENQCLHQMVEYHQITSQ 279
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.308 0.124 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,807,994
Number of extensions: 216265
Number of successful extensions: 1247
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1258
Number of HSP's successfully gapped: 4
Length of query: 235
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 140
Effective length of database: 8,502,049
Effective search space: 1190286860
Effective search space used: 1190286860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 110 (47.0 bits)