BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0481400 Os05g0481400|AK068705
(279 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0481400 Transcriptional factor B3 family protein 489 e-139
Os03g0184500 Transcriptional factor B3 family protein 136 1e-32
Os06g0194400 Transcriptional factor B3 family protein 135 3e-32
Os01g0234100 Transcriptional factor B3 family protein 126 1e-29
Os01g0723500 Transcriptional factor B3 family protein 70 1e-12
Os11g0197600 Transcriptional factor B3 family protein 69 3e-12
>Os05g0481400 Transcriptional factor B3 family protein
Length = 279
Score = 489 bits (1259), Expect = e-139, Method: Compositional matrix adjust.
Identities = 237/249 (95%), Positives = 237/249 (95%)
Query: 18 RRKRVLENLKHLEDLGIKKMSKSLLEAARLQKSTRASPKPRKKFEVGATEXXXXXXXXXX 77
RRKRVLENLKHLEDLGIKKMSKSLLEAARLQKSTRASPKPRKKFEVGATE
Sbjct: 18 RRKRVLENLKHLEDLGIKKMSKSLLEAARLQKSTRASPKPRKKFEVGATEVRRSSRARNS 77
Query: 78 XXYKENFDELNSFLCRRRGSRIRSTEQGRDYTGRVASYEQQQRAFKKAERLQNSLDPENP 137
YKENFDELNSFLCRRRGSRIRSTEQGRDYTGRVASYEQQQRAFKKAERLQNSLDPENP
Sbjct: 78 VSYKENFDELNSFLCRRRGSRIRSTEQGRDYTGRVASYEQQQRAFKKAERLQNSLDPENP 137
Query: 138 SFVKTMVRSHVSSCFWLGLPTRFCKLHLPPKEYKMVLEDEEGGEFDSVYIGNRTGLSGGW 197
SFVKTMVRSHVSSCFWLGLPTRFCKLHLPPKEYKMVLEDEEGGEFDSVYIGNRTGLSGGW
Sbjct: 138 SFVKTMVRSHVSSCFWLGLPTRFCKLHLPPKEYKMVLEDEEGGEFDSVYIGNRTGLSGGW 197
Query: 198 RGFAMHHNLEDGDSLVFELAEPDRFKIYIIKAVDEDANESEPADEEAIGDKDTSTEDAAE 257
RGFAMHHNLEDGDSLVFELAEPDRFKIYIIKAVDEDANESEPADEEAIGDKDTSTEDAAE
Sbjct: 198 RGFAMHHNLEDGDSLVFELAEPDRFKIYIIKAVDEDANESEPADEEAIGDKDTSTEDAAE 257
Query: 258 QDDSPNAEP 266
QDDSPNAEP
Sbjct: 258 QDDSPNAEP 266
>Os03g0184500 Transcriptional factor B3 family protein
Length = 237
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 84/123 (68%)
Query: 114 SYEQQQRAFKKAERLQNSLDPENPSFVKTMVRSHVSSCFWLGLPTRFCKLHLPPKEYKMV 173
S E + A +KAE L++ LDPE PSFVK M+ SHV FWLGLP FC+ +LP + +
Sbjct: 112 SMEARLEAARKAEELESQLDPEFPSFVKPMLHSHVVRGFWLGLPRHFCETYLPKHDAIVT 171
Query: 174 LEDEEGGEFDSVYIGNRTGLSGGWRGFAMHHNLEDGDSLVFELAEPDRFKIYIIKAVDED 233
L DE+ +FD+ Y+ + GLSGGW GFA+ H L DGD+ VF+L +P FK++II+A +D
Sbjct: 172 LLDEKDEQFDTNYLAYKNGLSGGWAGFALDHGLLDGDATVFQLVKPTTFKVHIIRATVDD 231
Query: 234 ANE 236
NE
Sbjct: 232 GNE 234
>Os06g0194400 Transcriptional factor B3 family protein
Length = 237
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 125/222 (56%), Gaps = 20/222 (9%)
Query: 18 RRKRVLENLKHLEDLGIKKMSKSLLEAARLQKSTRASPKPRKKFEV----GATEXXXXXX 73
RR++V N + LE+L + +S ++ E+A ++ SP ++K + GA E
Sbjct: 18 RRRQVEANKRKLEELRLHHLSAAVRESA-----SKPSPVKQRKRKARALPGAGEDAPLRR 72
Query: 74 XXXXXXYKEN---FDELNSFLCRRRGSRIRSTEQG--RDYTGRV-ASYEQQQRAFKKAER 127
E DE F RIR + G RD + RV A+ EQ+ A A+
Sbjct: 73 SGRVANLPEKPKYRDEFQDF-----EKRIRRSYGGKRRDLSNRVYATDEQRDYAINAAQE 127
Query: 128 LQNSLDPENPSFVKTMVRSHVSSCFWLGLPTRFCKLHLPPKEYKMVLEDEEGGEFDSVYI 187
L+ L + P FVK M++SHV+ FWL LPT F + +LP ++ + L DEE EFD++Y+
Sbjct: 128 LEEELGSDYPIFVKPMLQSHVTGGFWLSLPTHFSRKYLPKRDETIRLVDEEDDEFDTLYL 187
Query: 188 GNRTGLSGGWRGFAMHHNLEDGDSLVFELAEPDRFKIYIIKA 229
N+ GLSGGWRGF++ H L DGD LVF+L + +FK+YII+A
Sbjct: 188 ANKRGLSGGWRGFSIAHKLVDGDCLVFQLIQRTKFKVYIIRA 229
>Os01g0234100 Transcriptional factor B3 family protein
Length = 495
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 76/108 (70%)
Query: 121 AFKKAERLQNSLDPENPSFVKTMVRSHVSSCFWLGLPTRFCKLHLPPKEYKMVLEDEEGG 180
A K+A+ +Q L E+PSFVK M+ SHV S FWLGLP FC +LP + +VLEDE G
Sbjct: 134 AMKRAQEIQTKLPAEHPSFVKHMLHSHVVSGFWLGLPAGFCNKYLPKHDTDIVLEDENGN 193
Query: 181 EFDSVYIGNRTGLSGGWRGFAMHHNLEDGDSLVFELAEPDRFKIYIIK 228
++ Y+G + GLS GWRGFA++H+++ GD +VFEL +FK++II+
Sbjct: 194 NHNTNYLGGKQGLSAGWRGFAINHDIKVGDVVVFELVSTTKFKVHIIR 241
>Os01g0723500 Transcriptional factor B3 family protein
Length = 402
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 111 RVASYEQQQRAFKKAER-----LQNSLDPENPSFVKTMVRSHVSSCFWLGLPTRFCKLHL 165
R Y ++RA AER + ++ P V M HV F + PT F + HL
Sbjct: 256 RYKGYVSRRRAVATAERQRATEIAHAFRSPLPYCVIRMSTMHVYYSFMMRFPTGFSRQHL 315
Query: 166 PPKEYKMVLEDEEGGEFDSVYIGN-RTGLSGGWRGFAMHHNLEDGDSLVFELAEPDRFKI 224
P + +VL D G + +YI N R LS GW FA + LE+GD VFEL F++
Sbjct: 316 PRERTDVVLRDPGGKVWSVLYIPNTRDRLSRGWCAFARGNCLEEGDYCVFELVAAAEFRV 375
Query: 225 YIIKAVD 231
+I + V+
Sbjct: 376 HIFRVVE 382
>Os11g0197600 Transcriptional factor B3 family protein
Length = 406
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 13/155 (8%)
Query: 87 LNSFLCRRRGSRIRSTEQGRDYTGRVASYEQQQRAFKKAER---LQNS--LDPENPSFVK 141
L FL R R +G+ R + Q+R +AE+ LQ + +NP V+
Sbjct: 245 LMRFLSGEVSRRGRCVSKGQ----RQLTVISQRRPVTEAEKDHALQRAREFKSKNPFAVQ 300
Query: 142 TMVRSHVSSCFWLGLPTRFCKLHLPPKEYKMVLEDEEG--GEFDSVYIGNRT--GLSGGW 197
M+ S+V F++ +P F + LP ++ L D +G E + VY +R+ SGGW
Sbjct: 301 IMMESYVYVGFFMNIPCEFVRECLPHTNKRITLWDPQGKAWEVNYVYYSDRSVGSFSGGW 360
Query: 198 RGFAMHHNLEDGDSLVFELAEPDRFKIYIIKAVDE 232
FA+ +NLE D VFEL + D K++I + V E
Sbjct: 361 GKFAVGNNLEKFDVCVFELVQKDNIKVHIYRVVPE 395
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,695,301
Number of extensions: 372274
Number of successful extensions: 1518
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1519
Number of HSP's successfully gapped: 6
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)