BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0463900 Os05g0463900|AK064382
         (541 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0463900  HECT domain containing protein                     1063   0.0  
Os02g0101700  Similar to HECT ubiquitin-protein ligase 3 (KA...   550   e-156
Os12g0428600  Similar to E3 ubiquitin protein ligase UPL2 (E...   128   1e-29
Os05g0159000  HECT domain containing protein                      124   2e-28
AK110355                                                          115   8e-26
Os05g0122400  Armadillo-like helical domain containing protein    114   2e-25
Os09g0252800  Similar to E3 ubiquitin protein ligase URE-B1 ...   109   5e-24
AK110192                                                          100   2e-21
>Os05g0463900 HECT domain containing protein
          Length = 541

 Score = 1063 bits (2749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/541 (95%), Positives = 515/541 (95%)

Query: 1   GKLPCKLDRSSPSYDILFMLKVLEGLNRYSFHLVSDERNRAFVHGSITXXXXXXXXXXXX 60
           GKLPCKLDRSSPSYDILFMLKVLEGLNRYSFHLVSDERNRAFVHGSIT            
Sbjct: 1   GKLPCKLDRSSPSYDILFMLKVLEGLNRYSFHLVSDERNRAFVHGSITDLDDLKVDVSVV 60

Query: 61  PQQEFVSAKLTDKLEQQMHDPLVLRSRCLPLWCTELMSACPFLFSFEARWKYFQLTAFGS 120
           PQQEFVSAKLTDKLEQQMHDPLVLRSRCLPLWCTELMSACPFLFSFEARWKYFQLTAFGS
Sbjct: 61  PQQEFVSAKLTDKLEQQMHDPLVLRSRCLPLWCTELMSACPFLFSFEARWKYFQLTAFGS 120

Query: 121 LTPQHGNMMDTSGSGVMTERVPSFSRKKFKVDRDNILVSAAKVMQSHARSNAMLEVEYEE 180
           LTPQHGNMMDTSGSGVMTERVPSFSRKKFKVDRDNILVSAAKVMQSHARSNAMLEVEYEE
Sbjct: 121 LTPQHGNMMDTSGSGVMTERVPSFSRKKFKVDRDNILVSAAKVMQSHARSNAMLEVEYEE 180

Query: 181 EVGTGLGPTMEFYTLISHEFQKSGLGMWRGELSGEAGLDNVHGGSVFVVAPNGLFPKPWS 240
           EVGTGLGPTMEFYTLISHEFQKSGLGMWRGELSGEAGLDNVHGGSVFVVAPNGLFPKPWS
Sbjct: 181 EVGTGLGPTMEFYTLISHEFQKSGLGMWRGELSGEAGLDNVHGGSVFVVAPNGLFPKPWS 240

Query: 241 THVDCSSFSEVNKQFHLLGQVVAKAVKDNRILDIPFSKAFYRLILGQELNIYDIHSFDPE 300
           THVDCSSFSEVNKQFHLLGQVVAKAVKDNRILDIPFSKAFYRLILGQELNIYDIHSFDPE
Sbjct: 241 THVDCSSFSEVNKQFHLLGQVVAKAVKDNRILDIPFSKAFYRLILGQELNIYDIHSFDPE 300

Query: 301 LAMTLMEFKALAARRKYLEXXXXXXXXXXXXXXYRGCRIEDLAIEFALPGYPEYVLSLEN 360
           LAMTLMEFKALAARRKYLE              YRGCRIEDLAIEFALPGYPEYVLSLEN
Sbjct: 301 LAMTLMEFKALAARRKYLESSSSGDCKSTSDLSYRGCRIEDLAIEFALPGYPEYVLSLEN 360

Query: 361 SLDNVSADNLEQYVSFVVDATIRSGIARQLEAFKSGFNEVFPLSMLQVFSEDELERLLCG 420
           SLDNVSADNLEQYVSFVVDATIRSGIARQLEAFKSGFNEVFPLSMLQVFSEDELERLLCG
Sbjct: 361 SLDNVSADNLEQYVSFVVDATIRSGIARQLEAFKSGFNEVFPLSMLQVFSEDELERLLCG 420

Query: 421 EQDTWDFAKLVDHIKFDHGYTSSSPPVINLLEVIQEFEGHQRRAFLQFITGSPRLPPGGL 480
           EQDTWDFAKLVDHIKFDHGYTSSSPPVINLLEVIQEFEGHQRRAFLQFITGSPRLPPGGL
Sbjct: 421 EQDTWDFAKLVDHIKFDHGYTSSSPPVINLLEVIQEFEGHQRRAFLQFITGSPRLPPGGL 480

Query: 481 AALNPKLTVVRKHNSNEADDDLPSVMTCANYLKLPPYSSKDKMREKLLYAITEGQGSFHL 540
           AALNPKLTVVRKHNSNEADDDLPSVMTCANYLKLPPYSSKDKMREKLLYAITEGQGSFHL
Sbjct: 481 AALNPKLTVVRKHNSNEADDDLPSVMTCANYLKLPPYSSKDKMREKLLYAITEGQGSFHL 540

Query: 541 S 541
           S
Sbjct: 541 S 541
>Os02g0101700 Similar to HECT ubiquitin-protein ligase 3 (KAKTUS protein)
          Length = 715

 Score =  550 bits (1416), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 287/583 (49%), Positives = 376/583 (64%), Gaps = 46/583 (7%)

Query: 1   GKLPCKLDRSSPSYDILFMLKVLEGLNRYSFHLVSDERNRAFVHGSITXXXXXXXXXXXX 60
            +LPC L+R++ +Y+IL +L+VLEGLN+ S  L     +  F  G IT            
Sbjct: 137 AELPCDLERTNSTYNILALLRVLEGLNQLSPRLRVHAASDDFAEGKITTLDELYRTGAKV 196

Query: 61  PQQEFVSAKLTDKLEQQMHDPLVLRSRCLPLWCTELMSACPFLFSFEARWKYFQLTAFG- 119
           P +EFV++KLT KL +QM D L L S  LP WC ++  ACPFLF FE R +YF  TAFG 
Sbjct: 197 PSEEFVNSKLTPKLARQMQDVLALCSGSLPSWCYQMTKACPFLFPFETRRQYFYSTAFGL 256

Query: 120 -----SLTPQHGNMMDTSGSGVMTERVPSFSRKKFKVDRDNILVSAAKVMQSHARSNAML 174
                 L  Q G+  +  G   +  R     R+K +V R+ IL SAAKVM+  +   A+L
Sbjct: 257 SRALNRLQQQQGDNQNAGGEREI--RFGRLQRQKVRVSRNRILDSAAKVMEMFSSQRAVL 314

Query: 175 EVEYEEEVGTGLGPTMEFYTLISHEFQKSGLGMWRGELSGEAGL---------------- 218
           EVEY  EVGTGLGPT+EFYTL+SHE Q   LG+WR     + G+                
Sbjct: 315 EVEYFGEVGTGLGPTLEFYTLLSHELQSVRLGLWRSSSPSDTGMQIDRSASPDDDLAAKE 374

Query: 219 ---DNVHGGSVFVVAPNGLFPKPWSTHVDCSS---FSEVNKQFHLLGQVVAKAVKDNRIL 272
              D    GS  + AP GLFP+PW   VD S    FS+V + F L+G+V+AK ++D R+L
Sbjct: 375 LSSDLPDNGSHLIQAPFGLFPRPWPLTVDASEGSRFSKVIEHFRLVGRVMAKVLQDGRLL 434

Query: 273 DIPFSKAFYRLILGQELNIYDIHSFDPELAMTLMEFKALAARRKYLEXXXXXXXXXXXXX 332
           D+P S A Y+LILGQEL+++DI SFD E   TL E + L  R+++LE             
Sbjct: 435 DLPLSTALYKLILGQELDLFDIISFDAEFGKTLQELQILVERKRFLESTYGMNQLEVTDL 494

Query: 333 XYRGCRIEDLAIEFALPGYPEYVL--SLENSLDNVSADNLEQYVSFVVDATIRSGIARQL 390
            +RG  IEDL ++F LPGYP+Y+L    EN++ N+   NLE+YV+ VVDAT++SGI RQ+
Sbjct: 495 RFRGTPIEDLCLDFTLPGYPDYILKEGEENTIVNIY--NLEEYVTLVVDATVKSGIMRQV 552

Query: 391 EAFKSGFNEVFPLSMLQVFSEDELERLLCGEQDTWDFAKLVDHIKFDHGYTSSSPPVINL 450
           EAF+SGFN+VF +S L++FS +EL+ L+CG ++ W+   LVD+IKFDHGYT+ SP ++NL
Sbjct: 553 EAFRSGFNQVFDISSLKIFSPEELDYLICGRREIWEPDSLVDNIKFDHGYTAKSPAIVNL 612

Query: 451 LEVIQEFEGHQRRAFLQFITGSPRLPPGGLAALNPKLTVVRKHNSN------------EA 498
           LE++ EF   Q+ AF QF+TG+PRLPPGGLAALNPKLT+VRKH S+             A
Sbjct: 613 LEIMAEFTPEQQHAFCQFVTGAPRLPPGGLAALNPKLTIVRKHPSSAVNTSNIAGVTESA 672

Query: 499 DDDLPSVMTCANYLKLPPYSSKDKMREKLLYAITEGQGSFHLS 541
           DDDLPSVMTCANYLKLPPYS+K+ MR+KLLYAI EG+GSF LS
Sbjct: 673 DDDLPSVMTCANYLKLPPYSTKEVMRKKLLYAILEGRGSFDLS 715
>Os12g0428600 Similar to E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-)
           (Ubiquitin-protein ligase 2)
          Length = 809

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 157/322 (48%), Gaps = 28/322 (8%)

Query: 223 GGSVFVVAPNGLF--PKPWSTHVDCSSFSEVNKQFHLLGQVVAKAVKDNRILDIPFSKAF 280
           G  +F    N L   P P S +      +E    F  +G+VV KA+ D ++LD+ F+++F
Sbjct: 507 GALLFTTVGNDLTFQPNPNSVYQ-----TEHLSYFKFVGRVVGKALFDGQLLDVHFTRSF 561

Query: 281 YRLILGQELNIYDIHSFDPELAMTLMEFKALAARRKYLEXXXXXXXXXXXXXXYRGCRIE 340
           Y+ ILG ++  +DI + DP     L ++         L+              Y    + 
Sbjct: 562 YKHILGVKVTYHDIEAIDPAYYKNL-KWMLENDISDVLDLSFSMDADEEKRILYEKAEVT 620

Query: 341 DLAIEFALPGYPEYVLSLENSLDNVSADNLEQYVSFVVDATIRSGIARQLEAFKSGFNEV 400
           D  +   +PG              V+ +N  +YV+ V +  + + I  Q+ +F  GFNE+
Sbjct: 621 DYEL---IPGGRNI---------KVTEENKHEYVNRVAEHRLTTAIRPQITSFMEGFNEL 668

Query: 401 FPLSMLQVFSEDELERLLCGEQDTWDFAKLVDHIKFDHGYTSSSPPVINLLEVIQEFEGH 460
            P  ++ +F++ ELE L+ G  D  D   L  + ++  GY+ +SP +    E++Q F   
Sbjct: 669 IPEELISIFNDKELELLISGLPDI-DLDDLKANTEYS-GYSIASPVIQWFWEIVQGFSKE 726

Query: 461 QRRAFLQFITGSPRLPPGGLAALN----PKLTVVRKHNSNEADDDLPSVMTCANYLKLPP 516
            +  FLQF+TG+ ++P  G +AL     P+   +  H +  + + LPS  TC N L LP 
Sbjct: 727 DKARFLQFVTGTSKVPLEGFSALQGISGPQRFQI--HKAYGSTNHLPSAHTCFNQLDLPE 784

Query: 517 YSSKDKMREKLLYAITEGQGSF 538
           Y+SK++++E+LL AI E    F
Sbjct: 785 YTSKEQLQERLLLAIHEANEGF 806
>Os05g0159000 HECT domain containing protein
          Length = 1030

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 197/456 (43%), Gaps = 61/456 (13%)

Query: 94   TELMSACPFLFSFEARWKYFQLTAFGSLTPQHGNMMDTSGSGVMTERVPSFSRKKFKVDR 153
            +E++   PFL  F +R K F        T Q  N   ++ S        + +R +FK+ R
Sbjct: 628  SEIIKLAPFLAPFTSRVKIF--------TSQLANSRQSTTSH------SALTRHRFKIRR 673

Query: 154  DNILVSAAKVMQSHARSNAMLEVEYEEEVGTGLGPTMEFYTLISHEFQKSGL---GMWRG 210
            + +L  A   +       +ML    EE++    GP    + +  H  +++G+   G+++ 
Sbjct: 674  NRLLEDAFDQL-------SMLS---EEDLK---GPIRVVF-VNEHGVEEAGIDGGGIFKD 719

Query: 211  --ELSGEAGLDNVHGGSVFVVAPNGLFPKPWSTHVDCSSFSEVNKQFHLLGQVVAKAVKD 268
              E    A  D V  G     A + L+P P S  V         + FH LG ++ KA+ +
Sbjct: 720  FMENITRAAFD-VQYGLFKETADHLLYPNPGSGLVHEQHL----QYFHFLGSLLGKAIYE 774

Query: 269  NRILDIPFSKAFYRLILGQELNIYDIHSFDPELAMTLMEFKALAARRKYLEXXXXXXXXX 328
              ++D+PF+  F   +  +   + D+ S DPEL   L+  K        LE         
Sbjct: 775  GILVDLPFATFFLSKLKHKYNFLNDLPSLDPELYRHLLSLKHYDGDISQLE-----LYFV 829

Query: 329  XXXXXYRGCRIEDLAIEFALPGYPEYVLSLENSLDNVSADNLEQYVSFVVDATIRSGIAR 388
                 Y     E+L     LPG  +           V+++N+  Y+  V +  +   I  
Sbjct: 830  IVNNEYGEQSEEEL-----LPGGRDM---------RVTSENVITYIHLVANHRLNYQIRA 875

Query: 389  QLEAFKSGFNEVFPLSMLQVFSEDELERLLCGEQDTWDFAKLVDHIKFDHGYTSSSPPVI 448
            Q   F  GF ++ P   + +F+E E + L+ G  ++ D   L  +  +  GY      + 
Sbjct: 876  QSTHFLRGFQQLIPNEWINMFNEHEFQVLISGSLESLDIDDLRSNTNYSGGYHPDHELID 935

Query: 449  NLLEVIQEFEGHQRRAFLQFITGSPRLPPGGLAALNPKLTVVRK---HNSNEADDDLPSV 505
               EV++ F  H ++ FL+F+TG  R P  G   L PK  + R        E +D LP+ 
Sbjct: 936  IFWEVLKSFSSHNQKKFLKFVTGCSRGPLLGFQYLEPKFCIQRAGVPGMEEEDEDRLPTS 995

Query: 506  MTCANYLKLPPYSSKDKMREKLLYAITEGQGSFHLS 541
             TC N LKLPPY +K ++  KLLYAI    G F LS
Sbjct: 996  ATCMNLLKLPPYRNKTQLESKLLYAINAEAG-FDLS 1030
>AK110355 
          Length = 1060

 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 140/292 (47%), Gaps = 26/292 (8%)

Query: 246  SSFSEVNKQFHLLGQVVAKAVKDNRILDIPFSKAFYRLILGQELNIYDIHSFDPELAMTL 305
            S+ +E++ +F L+G ++  A+ ++ ILD+ F    Y+ +LG +  + D+ +  P L   L
Sbjct: 790  SASTEIS-EFELIGNLLGLAIYNSVILDVRFPLVVYKKLLGIQPTLEDLCAIRPALGRGL 848

Query: 306  MEFKALAARRKYLEXXXXXXXXXXXXXXYRGCRIEDLAIEFALPGYPEYV-LSLENSLDN 364
             +        + +                  CR   + +   L G    V L    +   
Sbjct: 849  KQLLTFDGDVESVY-----------------CRSFAVTVTDKLLGTARNVELKANGAYIA 891

Query: 365  VSADNLEQYVSFVVDATIRSGIARQLEAFKSGFNEVFPLSMLQVFSEDELERLLCGEQDT 424
            V+  N +++V   VD  +   IA+Q  AF  GF  V     L++F  +ELE L+ GE   
Sbjct: 892  VTNGNRKEFVDLYVDFLLTKSIAKQWRAFDEGFKTVAGGDTLKLFRPEELELLIAGESKL 951

Query: 425  WDFAKLVDHIKFDHGYTSSSPPVINLLEVIQEFEGHQRRAFLQFITGSPRLPPGGLAALN 484
             DFA L +   ++ GY  +S  + +L  V+ E     ++ FL F TGS R+P  GL   N
Sbjct: 952  -DFAALQEAAVYEDGYNKNSRVIRDLWSVVHELSEDDKKRFLFFCTGSDRVPIKGLG--N 1008

Query: 485  PKLTVVRKHNSNEADDDLPSVMTCANYLKLPPYSSKDKMREKLLYAITEGQG 536
             +  V R  +S    D LPS  TC N+L LP YSS++K+++ LL A+   +G
Sbjct: 1009 LEFVVSRSADS----DRLPSAHTCFNHLLLPDYSSREKLKKYLLMALANNKG 1056
>Os05g0122400 Armadillo-like helical domain containing protein
          Length = 281

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/115 (49%), Positives = 78/115 (67%), Gaps = 3/115 (2%)

Query: 286 GQELNIYDIHSFDPELAMTLMEFKALAARRKYLEXXXXXXXXXXXXXXYRGCRIEDLAIE 345
            ++L+IYDI SFDP+L  T+MEF+AL  R+K+LE              Y+  R+EDL ++
Sbjct: 164 NKDLDIYDIPSFDPKLGKTVMEFQALVKRKKFLEERASNPAADLS---YKNVRLEDLCLD 220

Query: 346 FALPGYPEYVLSLENSLDNVSADNLEQYVSFVVDATIRSGIARQLEAFKSGFNEV 400
           F LPG PEY L    S   V+ DNLE+YVS +VDAT++SGI+ Q+EAFK+G N+V
Sbjct: 221 FTLPGNPEYELVPGGSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKV 275
>Os09g0252800 Similar to E3 ubiquitin protein ligase URE-B1 (EC 6.3.2.-) (Upstream
            regulatory element binding protein 1) (Fragment)
          Length = 1379

 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 163/366 (44%), Gaps = 70/366 (19%)

Query: 174  LEVEYEEEVGTGLGP-TMEFYTLISHEFQKSGLGMWRGELSGEAGLDNVHGGSVFVVAPN 232
            L V+++ E G   G  T E+Y L+S      G  ++            V   + F   PN
Sbjct: 1066 LTVQFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFT----------TVGNNATFQPNPN 1115

Query: 233  GLFPKPWSTHVDCSSFSEVNKQFHLLGQVVAKAVKDNRILDIPFSKAFYRLILGQELNIY 292
             ++    + H+           F  +G+VVAKA+ D ++LD+ F+++FY+ ILG ++  +
Sbjct: 1116 SVY---QTEHL---------SYFKFVGRVVAKALFDGQLLDVHFTRSFYKHILGVKVTYH 1163

Query: 293  DIHSFDPELAMTLMEFKALAARRKYLEXXXXXXXXXXXXXXYRGCRIEDLAIEFALPGYP 352
            DI + DP+    L         +  LE                   I DL      P   
Sbjct: 1164 DIEAVDPDYYKNL---------KWMLENDV--------------SDIPDLTFSMD-PDEE 1199

Query: 353  EYVLSLENSLDN-----------VSADNLEQYVSFVVDATIRSGIARQLEAFKSGFNEVF 401
            +++L  +N + +           V+ +   +YV  V +  + + I  Q+ AF  GF E+ 
Sbjct: 1200 KHILYEKNEVTDYELKPGGRNIRVTEETKHEYVDLVAEHILTTAIRPQINAFLEGFTELV 1259

Query: 402  PLSMLQVFSEDELERLLCG--EQDTWDFAKLVDHIKFDHGYTSSSPPVINLLEVIQEFEG 459
            P  ++ +F + ELE L+ G  E D  D     ++I    GY+ +SP ++   EV+  F  
Sbjct: 1260 PRELISLFHDKELELLISGLPEIDFDDLKANAEYI----GYSPASPVILWFWEVVNGFSK 1315

Query: 460  HQRRAFLQFITGSPRLPPGGLAALN----PKLTVVRKHNSNEADDDLPSVMTCANYLKLP 515
                 FLQF+TG+ ++P  G  AL     P+   +  H +  A + LPS  TC N L LP
Sbjct: 1316 EDMARFLQFVTGTSKVPLEGFKALQGISGPQRFQI--HKAYGAPERLPSAHTCFNQLDLP 1373

Query: 516  PYSSKD 521
             YSSK+
Sbjct: 1374 EYSSKE 1379
>AK110192 
          Length = 849

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 152/349 (43%), Gaps = 53/349 (15%)

Query: 211 ELSGEAGLDNVHGG---SVFVVAPNGLFPK-----PWSTH----VDCSSFSEVNKQ---- 254
           +  GE GLD  +GG     F + P+ +F        +S H    +  +  S +N +    
Sbjct: 527 KFDGEDGLD--YGGLSREFFFLLPHEMFNPFYCLFEYSAHDNYTLQINPHSGINPEHLNY 584

Query: 255 FHLLGQVVAKAVKDNRILDIPFSKAFYRLILGQELNIYDIHSFDPELAMTLMEFKALAAR 314
           F  +G+V+  A+   R LD  F  +FY++IL +++ + D+ S D +   +L         
Sbjct: 585 FKFIGRVLGLAIFHRRFLDAYFIVSFYKMILKKKITLSDLESVDADYHRSL--------- 635

Query: 315 RKYLEXXXXXXXXXXXXXXYRGCRIEDLAIEFALPGYPEYVLSLENSLDNVSADNLEQYV 374
            +++                     E + IE    G  E V         V+ +N ++YV
Sbjct: 636 -QWMLDNSIEGIVEETFTAVEDKFGEMVTIELKKGG--EEV--------EVTDENKKEYV 684

Query: 375 SFVVDATIRSGIARQLEAFKSGFNEVFPLSMLQVFSEDELERLLCG--EQDTWDFAKLVD 432
             + +  I   +  Q +AF SGF E+ P  ++ VF E ELE L+ G  E D  D+ K  D
Sbjct: 685 ELMTEWRISKRVEEQFKAFISGFTELIPQDLINVFGERELELLIGGMSEIDVDDWKKFTD 744

Query: 433 HIKFDHGYTSSSPPVINLLEVIQEFEGHQRRAFLQFITGSPRLPPGGLAALNP-----KL 487
           +     G+T     V    + ++ +   ++   LQF TG+ R+P  G   L       + 
Sbjct: 745 Y----RGFTEQDQVVQWFWQCVRAWPTEKKSRLLQFATGTSRIPVNGFKDLQGSDGPRRF 800

Query: 488 TVVRKHNSNEADDDLPSVMTCANYLKLPPYSSKDKMREKLLYAITEGQG 536
           T+ +  + N+    LP   TC N + LPPY S + +  KL  AI EG G
Sbjct: 801 TIEKSGDVNQ----LPKSHTCFNRIDLPPYPSFETLESKLALAIEEGMG 845
  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,559,411
Number of extensions: 711401
Number of successful extensions: 1374
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1359
Number of HSP's successfully gapped: 8
Length of query: 541
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 435
Effective length of database: 11,501,117
Effective search space: 5002985895
Effective search space used: 5002985895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)