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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0122400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.24 (0.0477) R2 : 0.539
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.77 (0.12) R2dC : 0.542 R2C : 0.538
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0674 (0.1) R2dN8 : 0.000592 R2N8 : -0.00281
σ : 0.898
deviance : 368.66
__
_____
C
peak time of C : 20.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
333.26 0.858 4.15 1.5 2.74 -0.855 0.16 -4 0.0699 20.4 1.14 11433 -- --
347.27 0.868 4.26 0.792 2.94 -0.54 0.568 -- -0.06 20.4 11.64 27198 -- --
333.17 0.85 4.14 1.52 2.73 -0.903 -- -4.15 0.0776 20.4 1.068 11407 -- --
341.59 0.861 4.24 0.461 2.8 -0.768 -- -- -0.306 20.5 10.01 25065 -- --
631.87 1.18 4.14 0.645 -- 1.18 -- 0.16 0.000509 -- 1.068 11407 -- --
357.33 0.886 4.22 0.655 2.77 -- 0.334 -- 0.0042 20.5 -- -- -- --
357.69 0.886 4.22 0.645 2.77 -- -- -- 0.00439 20.5 -- -- -- --
632.04 1.18 4.14 0.646 -- 1.18 -- -- 0.00117 -- 1.068 11407 -- --
344.48 0.864 4.27 -- 2.74 -0.731 -- -- -0.358 20.5 10 25841 -- --
788.15 1.31 4.15 0.633 -- -- -- -- -0.0222 -- -- -- -- --
368.66 0.898 4.24 -- 2.77 -- -- -- -0.0674 20.5 -- -- -- --
643.05 1.18 4.16 -- -- 1.18 -- -- -0.0705 -- 1.068 11407 -- --
798.72 1.32 4.17 -- -- -- -- -- -0.0925 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 323.07 radiation 30 270 < th dose dependent rect. 8 19
2 323.38 radiation 10 270 < th dose independent rect. 10 17
3 323.42 radiation 20 270 < th dose dependent rect. 10 17
11 324.86 radiation 30 720 < th dose dependent rect. 11 1
21 325.69 temperature 30 270 < th dose dependent rect. 8 7
24 325.76 radiation 20 720 < th dose dependent rect. 24 13
26 325.88 radiation 20 720 < th dose independent rect. 11 1
54 327.42 radiation 20 720 < th dose independent rect. 24 12
103 329.45 temperature 30 90 < th dose independent rect. 10 17
107 329.60 radiation 40 270 < th dose dependent rect. 8 7
110 329.72 temperature 30 270 < th dose dependent rect. 11 1
118 329.95 temperature 30 720 < th dose independent rect. 24 12
125 330.14 temperature 30 270 < th dose independent rect. 8 6
126 330.14 temperature 30 90 < th dose independent rect. 10 6
133 330.33 radiation 40 720 < th dose dependent rect. 24 9
137 330.47 atmosphere 1000 90 > th dose independent rect. 10 17
158 330.81 atmosphere 1000 10 > th dose independent rect. 11 16
162 330.85 temperature 30 720 < th dose independent rect. 11 1
180 331.21 temperature 25 720 < th dose independent rect. 6 6
211 331.63 atmosphere 1010 270 < th dose independent rect. 18 9
225 331.84 temperature 15 10 > th dose independent rect. 11 16
237 331.99 radiation 40 270 < th dose independent rect. 8 6
238 331.99 radiation 20 270 < th dose independent rect. 8 7
244 332.02 temperature 30 270 < th dose dependent sin 22 NA
279 332.47 wind 7 270 < th dose independent rect. 3 14
286 332.54 temperature 30 43200 > th dose independent rect. 18 15
294 332.65 temperature 30 43200 < th dose independent rect. 18 15
296 332.67 temperature 15 270 > th dose independent rect. 17 10
304 332.73 radiation 1 4320 > th dose independent rect. 18 11
324 332.83 temperature 30 43200 > th dose dependent rect. 18 15
329 332.90 radiation 1 4320 < th dose independent rect. 8 22
332 332.93 temperature 30 270 < th dose independent rect. 22 14
338 332.98 atmosphere 1000 270 > th dose independent rect. 8 18
339 332.98 radiation 1 4320 < th dose dependent rect. 8 22
340 333.00 wind 1 43200 < th dose dependent rect. 2 3
341 333.02 temperature 25 270 < th dose independent rect. 7 13
343 333.06 atmosphere 995 270 > th dose dependent rect. 8 5
348 333.09 humidity 70 43200 > th dose dependent rect. 17 9
352 333.12 temperature 25 43200 < th dose dependent rect. 4 1
353 333.12 humidity 50 43200 > th dose dependent rect. 21 1
355 333.13 temperature 10 43200 > th dose dependent rect. 4 1
360 333.14 temperature 20 43200 > th dose dependent rect. 7 1
366 333.16 temperature 30 270 < th dose independent rect. 8 19
377 333.18 radiation 1 4320 > th dose independent rect. 8 22
384 333.19 humidity 70 43200 > th dose dependent rect. 21 2
397 333.21 temperature 10 43200 > th dose dependent rect. 2 6
405 333.23 temperature 30 43200 < th dose independent rect. 15 1
424 333.25 temperature 30 43200 > th dose independent rect. 15 1
425 333.25 temperature 30 43200 > th dose independent rect. 18 1
466 333.28 radiation 1 4320 < th dose dependent rect. 8 15
467 333.28 radiation 1 4320 < th dose dependent rect. 8 20
470 333.29 temperature 10 43200 > th dose dependent rect. 18 1
480 333.30 radiation 1 4320 < th dose dependent rect. 8 10
484 333.30 radiation 1 4320 < th dose dependent rect. 8 18
505 333.34 temperature 25 43200 < th dose independent rect. 6 2
521 333.36 temperature 25 43200 > th dose independent rect. 6 2
522 333.36 temperature 30 43200 < th dose independent rect. 18 10
524 333.36 temperature 30 43200 < th dose dependent rect. 18 1
541 333.38 radiation 20 720 < th dose independent rect. 16 20
553 333.40 radiation 40 720 < th dose independent rect. 24 12
567 333.41 atmosphere 1005 270 < th dose independent rect. 6 1
591 333.42 temperature 25 43200 < th dose dependent rect. 14 18
593 333.43 temperature 30 43200 < th dose independent rect. 18 6
605 333.43 temperature 25 43200 < th dose dependent rect. 17 15
639 333.47 temperature 30 43200 < th dose independent rect. 18 1
695 333.51 temperature 20 43200 > th dose independent rect. 24 1
696 333.51 temperature 25 43200 < th dose dependent sin 10 NA
708 333.52 temperature 25 43200 < th dose dependent sin 8 NA
738 333.53 temperature 10 43200 > th dose dependent rect. 17 15
777 333.56 temperature 20 43200 > th dose independent rect. 4 1
800 333.56 temperature 25 43200 < th dose dependent rect. 2 17
860 333.58 temperature 10 43200 > th dose dependent rect. 13 19
931 333.60 temperature 10 43200 > th dose dependent rect. 2 18
940 333.60 temperature 10 43200 > th dose dependent rect. 2 20
995 333.61 temperature 25 43200 < th dose dependent rect. 21 23
999 333.62 temperature 10 43200 > th dose dependent sin 8 NA