BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0463400 Os05g0463400|AK100354
(520 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0463400 PWWP domain containing protein 925 0.0
Os05g0122500 PWWP domain containing protein 140 3e-33
Os05g0149200 PWWP domain containing protein 80 3e-15
>Os05g0463400 PWWP domain containing protein
Length = 520
Score = 925 bits (2390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/501 (90%), Positives = 454/501 (90%)
Query: 1 MELEGDPRLVGVALGEYLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MELEGDPRLVGVALGEYLT
Sbjct: 1 MELEGDPRLVGVALGEYLTDGEEVMVVGGAGEVAVAARVVKVDGGKVVVAMDEDAAAGGG 60
Query: 61 XXXXXXSDLLYATGSAAVGEGYGGECTDNMQELLDGGGAEERMLGVELGGFRGEAGWTLM 120
SDLLYATGSAAVGEGYGGECTDNMQELLDGGGAEERMLGVELGGFRGEAGWTLM
Sbjct: 61 VGVGVVSDLLYATGSAAVGEGYGGECTDNMQELLDGGGAEERMLGVELGGFRGEAGWTLM 120
Query: 121 PVGDAAIETSEEMSDPVTLQYSETGLTGDDQRAKYRLPPLDGYGFRASGLVWSKLKGHPW 180
PVGDAAIETSEEMSDPVTLQYSETGLTGDDQRAKYRLPPLDGYGFRASGLVWSKLKGHPW
Sbjct: 121 PVGDAAIETSEEMSDPVTLQYSETGLTGDDQRAKYRLPPLDGYGFRASGLVWSKLKGHPW 180
Query: 181 WPGEIFDTSDASELALKHQKKKGSHLVAYFGSNTFAWCDESQLKPFMSNYSQMANQSNSD 240
WPGEIFDTSDASELALKHQKKKGSHLVAYFGSNTFAWCDESQLKPFMSNYSQMANQSNSD
Sbjct: 181 WPGEIFDTSDASELALKHQKKKGSHLVAYFGSNTFAWCDESQLKPFMSNYSQMANQSNSD 240
Query: 241 AFISSVNLALEEISRRILSGMCCFCLPEDLSDNCMSYMVENSGLRDGVTCSKVTRSEILE 300
AFISSVNLALEEISRRILSGMCCFCLPEDLSDNCMSYMVENSGLRDGVTCSKVTRSEILE
Sbjct: 241 AFISSVNLALEEISRRILSGMCCFCLPEDLSDNCMSYMVENSGLRDGVTCSKVTRSEILE 300
Query: 301 CFNAENFLSYLRSLALFPGQGGELLDLVIACSQLTSFFQSKGCHELASFGSGSELVDDGM 360
CFNAENFLSYLRSLALFPGQGGELLDLVIACSQLTSFFQSKGCHELASFGSGSELVDDGM
Sbjct: 301 CFNAENFLSYLRSLALFPGQGGELLDLVIACSQLTSFFQSKGCHELASFGSGSELVDDGM 360
Query: 361 DSSSTKNVLLPEAVTYEQKPSEGKPKRRRIKTCVKKPQNDLELTEENPISSLNNECTFVD 420
DSSSTKNVLLPEAVTYEQKPSEGKPKRRRIKTCVKKPQNDLELTEENPISSLNNECTFVD
Sbjct: 361 DSSSTKNVLLPEAVTYEQKPSEGKPKRRRIKTCVKKPQNDLELTEENPISSLNNECTFVD 420
Query: 421 CMGLNIIGKVKGKRSEKRRKYVPSPEVHTTDHGQDDSWSGFCLNNDPTDTLGEASAKMRP 480
CMGLNIIGKVKGKRSEKRRKYVPSPEVHTTDHGQDDSWSGFCLNNDPTDTLGEASAKMRP
Sbjct: 421 CMGLNIIGKVKGKRSEKRRKYVPSPEVHTTDHGQDDSWSGFCLNNDPTDTLGEASAKMRP 480
Query: 481 RRKQRSSKETCAPSSDLSSHV 501
RRKQRSSKETCAPSSDLSSHV
Sbjct: 481 RRKQRSSKETCAPSSDLSSHV 501
>Os05g0122500 PWWP domain containing protein
Length = 494
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 164 GFRASGLVWSKLKGHPWWPGEIFDTSDASELALKHQKKKGSHLVAYFGSNTFAWCDESQL 223
GF LVW K++ HPWWPG++FD +DASE AL+ ++K G+ LVA+F TFAW D +L
Sbjct: 88 GFAPGRLVWGKVRCHPWWPGQVFDPADASEQALEERRKHGATLVAFFWDKTFAWVDADEL 147
Query: 224 KPFM---SNYSQMANQSNS--DAFISSVNLALEEISRRILSGM-CCFCLPEDLSDNCMSY 277
PF +++ +A QS A +SV+ AL E++RR+ +G+ CC C D +
Sbjct: 148 LPFRGDGGDFALLAGQSAHAMPALTASVDAALGEVARRVAAGLSCCCCC--DGAAVAKKQ 205
Query: 278 MVENSGLRDGVTCSKVTRSEILECFNAENFLSYLRSLALFPGQGGELLDLVIACSQLTSF 337
++EN+G+R+G + V + E F+ Y+ +LA+ P G + LDL IA +QL +F
Sbjct: 206 VIENAGIREGAHGATVDAAFTRGALRGEAFVGYVSALAVAPLAGADRLDLAIATAQLKAF 265
Query: 338 FQSKG 342
+ +G
Sbjct: 266 DRWRG 270
>Os05g0149200 PWWP domain containing protein
Length = 1059
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 106/251 (42%), Gaps = 26/251 (10%)
Query: 164 GFRASGLVWSKLKGHPWWPGEIFDTSDASELALKHQKKKGSHLVAYFGSNTFAWCDESQL 223
G R +VW K+K HPWWPG ++ + S+ ++ + G LVA+FG +++ W + +L
Sbjct: 43 GVRFGDMVWGKVKSHPWWPGHVYSITLTSDGEVRRGYRDGLVLVAFFGDSSYGWFEPHEL 102
Query: 224 KPFMSNYSQMANQSNSDAFISSVNLALEEISRRILSGMCCFC------LPEDLSDNCMSY 277
PF ++ + Q F ++++ A +E++RR C C P +L +
Sbjct: 103 LPFEEHFREKFAQPGGRNFPTAIDEAADEVARRAALAFLCPCHRPNAARPHELDPRYL-- 160
Query: 278 MVENSGLRDGVTCSKVTRSEILECFNAENFLSYLRSLALFPGQGGELL---DLVIACSQL 334
+V+ G + E + L YL+ A+ EL+ I Q+
Sbjct: 161 LVDVPGFDTDAEYHPEQVAAEREKIDPRALLDYLKGAAVEQLDAAELIGKPKRHIPAVQM 220
Query: 335 TSFFQSKGCHELASFGSGSELVDD--GMDSSSTKNVLLPEAVTYEQKPSEGKPKRRRI-- 390
+S + + L+ + GMD + E+K EGK RR+
Sbjct: 221 SSMLE---AYRLSRYALKDPTYAQAFGMDYDEAQAA----KTALEKKAREGK---RRVWW 270
Query: 391 -KTCVKKPQND 400
+ ++PQ+D
Sbjct: 271 DRKTQEEPQDD 281
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,953,987
Number of extensions: 753977
Number of successful extensions: 1442
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1441
Number of HSP's successfully gapped: 3
Length of query: 520
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 415
Effective length of database: 11,553,331
Effective search space: 4794632365
Effective search space used: 4794632365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)