BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0460600 Os05g0460600|AK072931
(536 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0460600 Similar to GTP cyclohydrolase II/3,4-dihydroxy... 1028 0.0
Os02g0572400 Similar to Riboflavin biosynthesis protein rib... 596 e-170
Os07g0658550 GTP cyclohydrolase II domain containing protein 93 5e-19
Os02g0223200 Similar to GTP cyclohydrolase II/3,4-dihydroxy... 89 1e-17
Os08g0481950 3,4-Dihydroxy-2-butanone 4-phosphate synthase ... 78 1e-14
>Os05g0460600 Similar to GTP cyclohydrolase
II/3,4-dihydroxy-2-butanone-4-phosphate synthase- like
protein (Fragment)
Length = 536
Score = 1028 bits (2658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/536 (96%), Positives = 515/536 (96%)
Query: 1 MDRVXXXXXXXXXTVVNTRVQQGSGGINSIGFAVIRKGSLKLRCYAIGGLGGGENLNDPL 60
MDRV TVVNTRVQQGSGGINSIGFAVIRKGSLKLRCYAIGGLGGGENLNDPL
Sbjct: 1 MDRVLLSSQLSSQTVVNTRVQQGSGGINSIGFAVIRKGSLKLRCYAIGGLGGGENLNDPL 60
Query: 61 KESNNGPVLQGFNGSSASFRTVGAKITQETGDFFVSDAEGDPDKPTDGFSSIDEAIGALH 120
KESNNGPVLQGFNGSSASFRTVGAKITQETGDFFVSDAEGDPDKPTDGFSSIDEAIGALH
Sbjct: 61 KESNNGPVLQGFNGSSASFRTVGAKITQETGDFFVSDAEGDPDKPTDGFSSIDEAIGALH 120
Query: 121 EGKFVIAVDDESGDNEGDLVMAATLADPESIAFMIRNGSGIISVGMKEEDLTRLMIPMMS 180
EGKFVIAVDDESGDNEGDLVMAATLADPESIAFMIRNGSGIISVGMKEEDLTRLMIPMMS
Sbjct: 121 EGKFVIAVDDESGDNEGDLVMAATLADPESIAFMIRNGSGIISVGMKEEDLTRLMIPMMS 180
Query: 181 PXXXXXXXXXXXXTVTVDARVGISTGVSAADRAKTIFTLASPDSKPTDLRRPGHIFPLKY 240
P TVTVDARVGISTGVSAADRAKTIFTLASPDSKPTDLRRPGHIFPLKY
Sbjct: 181 PIAEIEDISAAASTVTVDARVGISTGVSAADRAKTIFTLASPDSKPTDLRRPGHIFPLKY 240
Query: 241 RNGGVLKRAGHTEASVDLVALAGLRPVSVLSTVINPVDGSMAGMPVLKQMALEHDIPIVS 300
RNGGVLKRAGHTEASVDLVALAGLRPVSVLSTVINPVDGSMAGMPVLKQMALEHDIPIVS
Sbjct: 241 RNGGVLKRAGHTEASVDLVALAGLRPVSVLSTVINPVDGSMAGMPVLKQMALEHDIPIVS 300
Query: 301 IADLIRYRRKREKLVELIAVSRLPTKWGLFRAYCYQSKLDGTEHIAVAKGDIGDGEDVLV 360
IADLIRYRRKREKLVELIAVSRLPTKWGLFRAYCYQSKLDGTEHIAVAKGDIGDGEDVLV
Sbjct: 301 IADLIRYRRKREKLVELIAVSRLPTKWGLFRAYCYQSKLDGTEHIAVAKGDIGDGEDVLV 360
Query: 361 RVHSECLTGDILGSARCDCGNQLDLAMQLIDKAGRGVLVYLRGHEGRGIGLGQKLRAYNL 420
RVHSECLTGDILGSARCDCGNQLDLAMQLIDKAGRGVLVYLRGHEGRGIGLGQKLRAYNL
Sbjct: 361 RVHSECLTGDILGSARCDCGNQLDLAMQLIDKAGRGVLVYLRGHEGRGIGLGQKLRAYNL 420
Query: 421 QDDGHDTVQANVELGLAVDSREYGIGAQILRDMGVRTMRLMTNNPAKFVGLKGYGLAVVG 480
QDDGHDTVQANVELGLAVDSREYGIGAQILRDMGVRTMRLMTNNPAKFVGLKGYGLAVVG
Sbjct: 421 QDDGHDTVQANVELGLAVDSREYGIGAQILRDMGVRTMRLMTNNPAKFVGLKGYGLAVVG 480
Query: 481 RVPVISPITKENQRYLETKRTKMGHVYGSDLPGNVPEEFLNPDDIAGDQDEDDTHN 536
RVPVISPITKENQRYLETKRTKMGHVYGSDLPGNVPEEFLNPDDIAGDQDEDDTHN
Sbjct: 481 RVPVISPITKENQRYLETKRTKMGHVYGSDLPGNVPEEFLNPDDIAGDQDEDDTHN 536
>Os02g0572400 Similar to Riboflavin biosynthesis protein ribA, chloroplast
precursor [Includes: GTP cyclohydrolase II (EC 3.5.4.25)
Length = 553
Score = 596 bits (1537), Expect = e-170, Method: Compositional matrix adjust.
Identities = 287/412 (69%), Positives = 339/412 (82%), Gaps = 1/412 (0%)
Query: 97 DAEGDPDKPTDGFSSIDEAIGALHEGKFVIAVDDESGDNEGDLVMAATLADPESIAFMIR 156
D E D D PT+GFSSI EAI + +GK VI VDDES +NEGDL+MAA+L PE++AF++R
Sbjct: 124 DTEQDLDSPTEGFSSISEAIKDIQQGKLVIVVDDESRENEGDLIMAASLVTPEAMAFVVR 183
Query: 157 NGSGIISVGMKEEDLTRLMIPMMSPXXXXXXXXXXXXTVTVDARVGISTGVSAADRAKTI 216
G+GI+ V MKEEDL RL +P+M TVTVDA+ G +TGVSA DRAKT+
Sbjct: 184 YGTGIVCVSMKEEDLERLNLPLMVATKENEEKLCTAFTVTVDAKEGTTTGVSAKDRAKTV 243
Query: 217 FTLASPDSKPTDLRRPGHIFPLKYRNGGVLKRAGHTEASVDLVALAGLRPVSVLSTVINP 276
TLASPDSKP D RPGHIFPLKYR GGVLKRAGHTEASVDL LAGL P +VL +++
Sbjct: 244 MTLASPDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAMLAGLPPAAVLCEIVDE 303
Query: 277 VDGSMAGMPVLKQMALEHDIPIVSIADLIRYRRKREKLVELIAVSRLPTKWGLFRAYCYQ 336
DGSMA +P L+ A ++ IVSIADLIRYRRKR++LVE +V+RLP +WG RAYCY+
Sbjct: 304 -DGSMARLPKLRVFAERENLKIVSIADLIRYRRKRDRLVERSSVARLPLRWGNVRAYCYR 362
Query: 337 SKLDGTEHIAVAKGDIGDGEDVLVRVHSECLTGDILGSARCDCGNQLDLAMQLIDKAGRG 396
S +DG EHIA+ KG+IGDG+ VLVRVHSECLTGDI GSARCDCG+QL +AM++I+KAGRG
Sbjct: 363 SVIDGIEHIAMVKGEIGDGQGVLVRVHSECLTGDIFGSARCDCGDQLAMAMEMIEKAGRG 422
Query: 397 VLVYLRGHEGRGIGLGQKLRAYNLQDDGHDTVQANVELGLAVDSREYGIGAQILRDMGVR 456
VLVYLRGHEGRGIGLG KLRAYNLQDDG DTV+AN +LGL VDSREYGIGAQILRD+GVR
Sbjct: 423 VLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEDLGLPVDSREYGIGAQILRDLGVR 482
Query: 457 TMRLMTNNPAKFVGLKGYGLAVVGRVPVISPITKENQRYLETKRTKMGHVYG 508
+M+LMTNNPAK+ GLKGYGL++VGRVP+++PIT EN+RYLETKRTKMGHVYG
Sbjct: 483 SMKLMTNNPAKYGGLKGYGLSIVGRVPLVTPITSENRRYLETKRTKMGHVYG 534
>Os07g0658550 GTP cyclohydrolase II domain containing protein
Length = 155
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 51/68 (75%), Gaps = 16/68 (23%)
Query: 416 RAYNLQDDGHDTVQANVELGLAVDSREYGIGAQILRDMGVRTMRLMTNNPAKFVGLKGYG 475
RAYNL DDGHDTVQANVELGLAVDSREYGIGAQ+ AKFVGLKGYG
Sbjct: 69 RAYNLLDDGHDTVQANVELGLAVDSREYGIGAQV----------------AKFVGLKGYG 112
Query: 476 LAVVGRVP 483
LAVVGRVP
Sbjct: 113 LAVVGRVP 120
>Os02g0223200 Similar to GTP cyclohydrolase
II/3,4-dihydroxy-2-butanone-4-phosphate synthase- like
protein (Fragment)
Length = 157
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/68 (70%), Positives = 49/68 (72%), Gaps = 16/68 (23%)
Query: 416 RAYNLQDDGHDTVQANVELGLAVDSREYGIGAQILRDMGVRTMRLMTNNPAKFVGLKGYG 475
R YNL DDGHDTVQANVELGLAVDSREYGIGAQ+ AKFVGLKGY
Sbjct: 69 RTYNLLDDGHDTVQANVELGLAVDSREYGIGAQV----------------AKFVGLKGYR 112
Query: 476 LAVVGRVP 483
LAVVGRVP
Sbjct: 113 LAVVGRVP 120
>Os08g0481950 3,4-Dihydroxy-2-butanone 4-phosphate synthase domain containing
protein
Length = 96
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 51/75 (68%)
Query: 123 KFVIAVDDESGDNEGDLVMAATLADPESIAFMIRNGSGIISVGMKEEDLTRLMIPMMSPX 182
++VI VDDE +NEGDL+MAA+ PE++AF++R+G+GI+ V MKE+DL RL +P+M
Sbjct: 11 QYVIVVDDEDRENEGDLIMAASKVTPEAMAFIVRHGTGIVCVSMKEDDLERLELPLMVTT 70
Query: 183 XXXXXXXXXXXTVTV 197
TV+V
Sbjct: 71 KENEEKLRTAFTVSV 85
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.138 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,486,846
Number of extensions: 844595
Number of successful extensions: 2182
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2179
Number of HSP's successfully gapped: 5
Length of query: 536
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 430
Effective length of database: 11,501,117
Effective search space: 4945480310
Effective search space used: 4945480310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)