FiT-DB / Search/ Help/ Sample detail
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Os02g0572400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Riboflavin biosynthesis protein ribA, chloroplast precursor [Includes: GTP cyclohydrolase II (EC 3.5.4.25); 3,4-dihydroxy-2-butanone 4- phosphate synthase (DHBP synthase)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.21 | 0.449 | 12 | -0.454 | 3.15 | -0.545 | -1.33 | 0.527 | -0.27 | 1.61 | 25.23 | 90 | -- | -- |
| 92.21 | 0.447 | 12 | -0.567 | 3.17 | -0.498 | -1.46 | -- | -0.326 | 1.63 | 25.22 | 84 | -- | -- |
| 97.01 | 0.459 | 12 | -0.262 | 3.17 | -0.532 | -- | 1.1 | -0.23 | 1.63 | 25.2 | 90 | -- | -- |
| 101.29 | 0.469 | 12 | -0.574 | 3.18 | -0.469 | -- | -- | -0.337 | 1.67 | 25.29 | 81 | -- | -- |
| 489.38 | 1.04 | 11.9 | 0.00357 | -- | -1.88 | -- | 0.705 | 0.125 | -- | 25.8 | 20 | -- | -- |
| 107.84 | 0.487 | 12 | -0.746 | 3.49 | -- | -1.33 | -- | -0.556 | 1.84 | -- | -- | -- | -- |
| 114.72 | 0.502 | 12 | -0.705 | 3.49 | -- | -- | -- | -0.548 | 1.85 | -- | -- | -- | -- |
| 490.82 | 1.03 | 11.9 | -0.131 | -- | -1.87 | -- | -- | 0.081 | -- | 25.83 | 9 | -- | -- |
| 109.71 | 0.488 | 12 | -- | 3.13 | -0.538 | -- | -- | -0.257 | 1.6 | 25.3 | 90 | -- | -- |
| 851.46 | 1.36 | 12 | -0.561 | -- | -- | -- | -- | -0.469 | -- | -- | -- | -- | -- |
| 127.8 | 0.529 | 12 | -- | 3.48 | -- | -- | -- | -0.47 | 1.85 | -- | -- | -- | -- |
| 491.27 | 1.03 | 11.9 | -- | -- | -1.88 | -- | -- | 0.0976 | -- | 25.84 | 9 | -- | -- |
| 859.77 | 1.37 | 12 | -- | -- | -- | -- | -- | -0.406 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.59 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 20 |
| 2 | 79.91 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 5 | 80.80 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 2 | 18 |
| 9 | 81.29 | radiation | 1.0 | 90 | < th | dose independent | rect. | 2 | 18 |
| 10 | 81.32 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 14 | 81.92 | temperature | 25.0 | 90 | < th | dose independent | rect. | 2 | 19 |
| 20 | 82.30 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 20 |
| 24 | 82.37 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 18 |
| 27 | 82.53 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 5 |
| 32 | 82.92 | radiation | 1.0 | 270 | < th | dose independent | rect. | 24 | 18 |
| 34 | 82.97 | temperature | 25.0 | 90 | < th | dose independent | rect. | 11 | 10 |
| 45 | 83.29 | temperature | 25.0 | 90 | < th | dose independent | rect. | 15 | 6 |
| 51 | 83.37 | radiation | 1.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 64 | 83.84 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 10 |
| 77 | 84.27 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 80 | 84.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 10 |
| 81 | 84.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 10 |
| 99 | 84.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 10 |
| 100 | 84.64 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 10 |
| 101 | 84.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 14 |
| 104 | 84.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 10 |
| 105 | 84.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 14 |
| 116 | 85.03 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 15 | 15 |
| 124 | 85.16 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 14 |
| 128 | 85.31 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 20 | 6 |
| 130 | 85.33 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 132 | 85.37 | radiation | 1.0 | 90 | > th | dose independent | sin | 1 | NA |
| 139 | 85.52 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 9 |
| 171 | 85.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 3 |
| 181 | 86.03 | radiation | 1.0 | 90 | < th | dose independent | sin | 1 | NA |
| 223 | 86.32 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 10 |
| 225 | 86.35 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 239 | 86.48 | wind | 9.0 | 90 | < th | dose independent | rect. | 20 | 6 |
| 241 | 86.50 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 14 |
| 242 | 86.50 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 243 | 86.52 | temperature | 10.0 | 90 | > th | dose independent | rect. | 20 | 6 |
| 244 | 86.52 | temperature | 30.0 | 90 | < th | dose independent | rect. | 20 | 6 |
| 245 | 86.52 | humidity | 50.0 | 90 | > th | dose independent | rect. | 20 | 6 |
| 248 | 86.52 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 20 | 6 |
| 249 | 86.52 | radiation | 1.0 | 90 | < th | dose independent | rect. | 20 | 6 |
| 254 | 86.52 | temperature | 10.0 | 90 | > th | dose independent | rect. | 2 | 18 |
| 255 | 86.52 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 2 | 18 |
| 256 | 86.52 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 20 | 6 |
| 262 | 86.55 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 6 |
| 264 | 86.56 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 283 | 86.67 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 18 |
| 284 | 86.70 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 20 | 6 |
| 286 | 86.70 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 20 | 6 |
| 302 | 86.79 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 305 | 86.79 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 309 | 86.79 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 315 | 86.79 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 316 | 86.79 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 336 | 86.79 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 18 |
| 341 | 86.80 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 21 | 6 |
| 425 | 87.13 | wind | 9.0 | 90 | < th | dose independent | rect. | 2 | 18 |
| 451 | 87.26 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 20 | 6 |
| 455 | 87.30 | wind | 9.0 | 10 | < th | dose dependent | rect. | 20 | 6 |
| 486 | 87.43 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 19 |
| 498 | 87.53 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 10 | 10 |
| 507 | 87.58 | humidity | 50.0 | 90 | > th | dose independent | rect. | 2 | 18 |
| 579 | 87.96 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 3 |
| 580 | 87.96 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 3 |
| 581 | 87.96 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 3 |
| 584 | 87.96 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 3 |
| 585 | 87.96 | radiation | 1.0 | 270 | < th | dose independent | rect. | 20 | 3 |
| 590 | 87.96 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 21 |
| 591 | 87.96 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 20 | 3 |
| 597 | 87.99 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 3 |
| 599 | 87.99 | temperature | 25.0 | 90 | > th | dose independent | rect. | 6 | 19 |
| 605 | 88.02 | wind | 1.0 | 270 | > th | dose independent | rect. | 20 | 3 |
| 615 | 88.10 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 20 | 3 |
| 629 | 88.16 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 3 |
| 630 | 88.16 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 3 |
| 644 | 88.22 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 18 |
| 648 | 88.22 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 18 |
| 656 | 88.29 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 21 |
| 731 | 88.43 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 741 | 88.46 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 20 | 3 |
| 760 | 88.48 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 20 |
| 771 | 88.48 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 20 |
| 779 | 88.54 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 14 |
| 791 | 88.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 21 |
| 795 | 88.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 798 | 88.62 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 11 |
| 810 | 88.63 | wind | 7.0 | 90 | < th | dose independent | rect. | 6 | 20 |
| 811 | 88.63 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 821 | 88.67 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 17 | 1 |
| 828 | 88.69 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 15 | 3 |
| 867 | 88.78 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 20 |
