BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0446300 Os05g0446300|AK066998
(145 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0446300 Similar to G10 protein homolog (EDG-2) 300 2e-82
Os04g0646100 Similar to Cell cycle control protein cwf14 288 1e-78
Os01g0857700 Similar to G10 288 1e-78
AK061754 288 1e-78
Os12g0149800 Similar to G10 276 3e-75
D10437 128 2e-30
>Os05g0446300 Similar to G10 protein homolog (EDG-2)
Length = 145
Score = 300 bits (769), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MPKIKTSRVKYPEGWELIEPTLRDLEAKMREAENDPHDGKRKCEALWPIFRISHQKSRYI 60
MPKIKTSRVKYPEGWELIEPTLRDLEAKMREAENDPHDGKRKCEALWPIFRISHQKSRYI
Sbjct: 1 MPKIKTSRVKYPEGWELIEPTLRDLEAKMREAENDPHDGKRKCEALWPIFRISHQKSRYI 60
Query: 61 YDLYYRRKEISKELYEFCLDQGHADKNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
YDLYYRRKEISKELYEFCLDQGHADKNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR
Sbjct: 61 YDLYYRRKEISKELYEFCLDQGHADKNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
Query: 121 VPKHLREEKVIECVHCGCRGCASGD 145
VPKHLREEKVIECVHCGCRGCASGD
Sbjct: 121 VPKHLREEKVIECVHCGCRGCASGD 145
>Os04g0646100 Similar to Cell cycle control protein cwf14
Length = 145
Score = 288 bits (736), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 137/145 (94%), Positives = 143/145 (98%)
Query: 1 MPKIKTSRVKYPEGWELIEPTLRDLEAKMREAENDPHDGKRKCEALWPIFRISHQKSRYI 60
MPKIKTSRVKYP GWELIEPT+R+L+AKMREAEND HDGKRKCEALWPIFRISHQ+SRYI
Sbjct: 1 MPKIKTSRVKYPGGWELIEPTIRELDAKMREAENDTHDGKRKCEALWPIFRISHQRSRYI 60
Query: 61 YDLYYRRKEISKELYEFCLDQGHADKNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
YDLYYRRKEISKELYEFCLDQG+AD+NLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR
Sbjct: 61 YDLYYRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
Query: 121 VPKHLREEKVIECVHCGCRGCASGD 145
VPKHLREEKVIECVHCGCRGCASGD
Sbjct: 121 VPKHLREEKVIECVHCGCRGCASGD 145
>Os01g0857700 Similar to G10
Length = 145
Score = 288 bits (736), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 137/145 (94%), Positives = 143/145 (98%)
Query: 1 MPKIKTSRVKYPEGWELIEPTLRDLEAKMREAENDPHDGKRKCEALWPIFRISHQKSRYI 60
MPKIKTSRVKYP GWELIEPT+R+L+AKMREAEND HDGKRKCEALWPIFRISHQ+SRYI
Sbjct: 1 MPKIKTSRVKYPGGWELIEPTIRELDAKMREAENDTHDGKRKCEALWPIFRISHQRSRYI 60
Query: 61 YDLYYRRKEISKELYEFCLDQGHADKNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
YDLYYRRKEISKELYEFCLDQG+AD+NLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR
Sbjct: 61 YDLYYRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
Query: 121 VPKHLREEKVIECVHCGCRGCASGD 145
VPKHLREEKVIECVHCGCRGCASGD
Sbjct: 121 VPKHLREEKVIECVHCGCRGCASGD 145
>AK061754
Length = 145
Score = 288 bits (736), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 137/145 (94%), Positives = 143/145 (98%)
Query: 1 MPKIKTSRVKYPEGWELIEPTLRDLEAKMREAENDPHDGKRKCEALWPIFRISHQKSRYI 60
MPKIKTSRVKYP GWELIEPT+R+L+AKMREAEND HDGKRKCEALWPIFRISHQ+SRYI
Sbjct: 1 MPKIKTSRVKYPGGWELIEPTIRELDAKMREAENDTHDGKRKCEALWPIFRISHQRSRYI 60
Query: 61 YDLYYRRKEISKELYEFCLDQGHADKNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
YDLYYRRKEISKELYEFCLDQG+AD+NLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR
Sbjct: 61 YDLYYRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
Query: 121 VPKHLREEKVIECVHCGCRGCASGD 145
VPKHLREEKVIECVHCGCRGCASGD
Sbjct: 121 VPKHLREEKVIECVHCGCRGCASGD 145
>Os12g0149800 Similar to G10
Length = 145
Score = 276 bits (706), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 128/145 (88%), Positives = 140/145 (96%)
Query: 1 MPKIKTSRVKYPEGWELIEPTLRDLEAKMREAENDPHDGKRKCEALWPIFRISHQKSRYI 60
MPKIKTS VKYP+GWELIEPTL +L +KMREAENDPHDG+RKCEALWPIF+I+HQ+SRY+
Sbjct: 1 MPKIKTSGVKYPDGWELIEPTLSELHSKMREAENDPHDGRRKCEALWPIFKINHQRSRYL 60
Query: 61 YDLYYRRKEISKELYEFCLDQGHADKNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
YDLYY RKEIS+ELYEFCLDQGHAD+NLIAKWKK GYERLCCLRCIQTRDHNFATTCVCR
Sbjct: 61 YDLYYNRKEISQELYEFCLDQGHADRNLIAKWKKQGYERLCCLRCIQTRDHNFATTCVCR 120
Query: 121 VPKHLREEKVIECVHCGCRGCASGD 145
VPKHLREE+VIECVHCGC+GCASGD
Sbjct: 121 VPKHLREEQVIECVHCGCKGCASGD 145
>D10437
Length = 115
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/80 (76%), Positives = 69/80 (86%)
Query: 15 WELIEPTLRDLEAKMREAENDPHDGKRKCEALWPIFRISHQKSRYIYDLYYRRKEISKEL 74
WELIEPTL +L +KMREAENDPHDG+RKCEA P R + +RY+YDLYY RKEIS+EL
Sbjct: 12 WELIEPTLSELHSKMREAENDPHDGRRKCEACGPSSRSITRGARYLYDLYYNRKEISQEL 71
Query: 75 YEFCLDQGHADKNLIAKWKK 94
YEFCLDQGHAD+NLIAKWKK
Sbjct: 72 YEFCLDQGHADRNLIAKWKK 91
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.140 0.469
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,656,457
Number of extensions: 226305
Number of successful extensions: 538
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 6
Length of query: 145
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 54
Effective length of database: 12,284,327
Effective search space: 663353658
Effective search space used: 663353658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 151 (62.8 bits)