BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0435700 Os05g0435700|AK069677
(215 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0435700 Similar to (3R)-hydroxymyristoyl-[acyl carrier... 346 9e-96
Os08g0224900 Similar to Plastid beta-hydroxyacyl-[acyl-carr... 148 3e-36
Os08g0225000 Similar to (3R)-hydroxymyristoyl-[acyl carrier... 147 4e-36
>Os05g0435700 Similar to (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
(EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase)
Length = 215
Score = 346 bits (887), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 176/215 (81%), Positives = 176/215 (81%)
Query: 1 METAAMPRSPCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGGEGEMP 60
METAAMPRSPCC GHGGEGEMP
Sbjct: 1 METAAMPRSPCCSLPSARVLPSRLPLLPRPAPAALSAPAARPVVARCAAAAGHGGEGEMP 60
Query: 61 IEKRFPPFPAVMDINQIRDILPHRFPFLLVDRVIDYKPGEYAVGIKNVTINDNFFPGHFP 120
IEKRFPPFPAVMDINQIRDILPHRFPFLLVDRVIDYKPGEYAVGIKNVTINDNFFPGHFP
Sbjct: 61 IEKRFPPFPAVMDINQIRDILPHRFPFLLVDRVIDYKPGEYAVGIKNVTINDNFFPGHFP 120
Query: 121 ERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLIIRMTL 180
ERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLIIRMTL
Sbjct: 121 ERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLIIRMTL 180
Query: 181 IKLQKRFGIAKMEGKAYVGGDLVCEGEFLMATGSE 215
IKLQKRFGIAKMEGKAYVGGDLVCEGEFLMATGSE
Sbjct: 181 IKLQKRFGIAKMEGKAYVGGDLVCEGEFLMATGSE 215
>Os08g0224900 Similar to Plastid beta-hydroxyacyl-[acyl-carrier protein]
dehydratase (Fragment)
Length = 217
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 70/77 (90%), Positives = 75/77 (97%)
Query: 134 MAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLIIRMTLIKLQKRFGIAKME 193
MAQVGGLVMLQPE+GGSR+NFFFAGIDKVRFRKPVIAGDTLI+RMTL K QKRFG+AKME
Sbjct: 1 MAQVGGLVMLQPEIGGSRDNFFFAGIDKVRFRKPVIAGDTLIMRMTLTKYQKRFGLAKME 60
Query: 194 GKAYVGGDLVCEGEFLM 210
GKAYVGGDLVCEGEFL+
Sbjct: 61 GKAYVGGDLVCEGEFLL 77
>Os08g0225000 Similar to (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
(EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase)
Length = 150
Score = 147 bits (372), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 75/79 (94%)
Query: 55 GEGEMPIEKRFPPFPAVMDINQIRDILPHRFPFLLVDRVIDYKPGEYAVGIKNVTINDNF 114
+ +PIEKRFPPFP+VMDINQIR+ILPHRFPFLLVDRVI+YK GEYAVGIKNVTINDNF
Sbjct: 56 AQEALPIEKRFPPFPSVMDINQIREILPHRFPFLLVDRVIEYKGGEYAVGIKNVTINDNF 115
Query: 115 FPGHFPERPIMPGVLMVEA 133
FPGHFPERPIMPGVLMVE+
Sbjct: 116 FPGHFPERPIMPGVLMVES 134
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.146 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,566,427
Number of extensions: 253386
Number of successful extensions: 504
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 3
Length of query: 215
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 118
Effective length of database: 11,971,043
Effective search space: 1412583074
Effective search space used: 1412583074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)