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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0224900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Plastid beta-hydroxyacyl-[acyl-carrier protein] dehydratase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0504) R2 : 0.0589
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.17 (0.219) R2dE : 0.062 R2E : 0.0542
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.142 (0.108) R2dN8 : 0.00471 R2N8 : -0.00304
σ : 0.942
deviance : 408.91
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 7.305
memory length : 3152
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
398.65 0.938 3.09 0.135 0.122 -1.2 1.92 -0.131 0.149 18.3 7.999 3147 -- --
398.65 0.93 3.08 0.131 0.119 -1.19 1.93 -- 0.154 18.2 7.9 3148 -- --
401.85 0.934 3.09 0.16 0.348 -1.2 -- -0.237 0.183 22.5 7.405 3138 -- --
401.7 0.933 3.09 0.124 0.335 -1.2 -- -- 0.159 22.8 7.415 3140 -- --
408.27 0.941 3.08 0.178 -- -1.41 -- -0.883 0.167 -- 7.5 3152 -- --
421.96 0.963 3.12 -0.219 0.0834 -- 2.08 -- -0.0187 17.8 -- -- -- --
425.12 0.966 3.12 -0.244 0.358 -- -- -- -0.0148 22.8 -- -- -- --
408.47 0.941 3.07 0.143 -- -1.24 -- -- 0.168 -- 7.315 3152 -- --
401.92 0.934 3.09 -- 0.333 -1.14 -- -- 0.145 22.8 8 3147 -- --
433.02 0.972 3.12 -0.236 -- -- -- -- -0.0127 -- -- -- -- --
426.68 0.966 3.12 -- 0.356 -- -- -- 0.0123 22.7 -- -- -- --
408.91 0.942 3.08 -- -- -1.17 -- -- 0.142 -- 7.305 3152 -- --
434.5 0.973 3.11 -- -- -- -- -- 0.0136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 392.92 wind 3.0 4320 > th dose dependent rect. 24 1
3 393.20 wind 5.0 4320 > th dose independent rect. 24 1
4 393.28 wind 7.0 4320 > th dose dependent rect. 22 4
5 393.63 wind 5.0 4320 < th dose independent rect. 24 1
16 395.52 wind 1.0 270 < th dose dependent rect. 20 6
17 395.53 wind 1.0 270 < th dose dependent rect. 18 8
26 396.04 wind 7.0 4320 > th dose independent rect. 21 5
38 396.33 wind 9.0 4320 > th dose independent rect. 19 1
39 396.33 wind 9.0 4320 > th dose dependent rect. 19 1
42 396.70 wind 1.0 270 < th dose independent rect. 20 6
45 396.79 wind 7.0 4320 < th dose independent rect. 21 5
47 396.87 wind 1.0 270 < th dose independent rect. 18 8
53 397.11 wind 7.0 4320 > th dose independent rect. 21 3
65 397.26 radiation 1.0 4320 > th dose independent rect. 18 1
90 397.55 temperature 25.0 30 > th dose dependent rect. 17 2
95 397.80 wind 1.0 270 < th dose independent rect. 14 12
97 397.92 temperature 20.0 30 > th dose dependent rect. 1 1
98 397.92 atmosphere 1010.0 270 < th dose dependent rect. 22 6
105 398.04 wind 1.0 720 < th dose independent rect. 22 2
107 398.05 atmosphere 1010.0 270 < th dose dependent rect. 23 4
119 398.43 radiation 1.0 14400 < th dose dependent rect. 3 2
130 398.73 radiation 1.0 14400 < th dose dependent rect. 20 9
140 398.85 temperature 25.0 30 > th dose dependent rect. 17 7
148 399.01 atmosphere 1005.0 720 < th dose independent rect. 18 4
149 399.02 wind 1.0 270 > th dose independent sin 18 NA
167 399.36 temperature 20.0 90 > th dose independent rect. 23 7
171 399.42 radiation 10.0 720 < th dose independent rect. 16 1
175 399.48 wind 1.0 270 < th dose independent sin 16 NA
188 399.63 radiation 10.0 720 < th dose independent rect. 16 10
218 399.97 temperature 20.0 90 > th dose independent rect. 21 9
223 400.14 wind 1.0 270 < th dose dependent sin 17 NA
224 400.16 atmosphere 1010.0 270 < th dose dependent rect. 1 1
274 400.84 humidity 70.0 720 > th dose independent rect. 16 2
285 400.94 temperature 10.0 720 > th dose dependent rect. 16 7
296 400.99 temperature 30.0 10 < th dose dependent rect. 16 12
298 401.00 temperature 30.0 90 < th dose dependent rect. 16 11
302 401.02 radiation 10.0 14400 < th dose dependent rect. 9 1
317 401.20 wind 7.0 4320 < th dose independent rect. 3 1
326 401.23 temperature 25.0 90 < th dose dependent rect. 16 7
333 401.33 wind 1.0 14400 > th dose independent rect. 19 7
343 401.42 radiation 1.0 14400 < th dose independent rect. 18 1
344 401.42 radiation 1.0 14400 < th dose independent rect. 18 3
348 401.43 humidity 70.0 720 > th dose independent rect. 16 12
353 401.46 wind 1.0 14400 > th dose independent rect. 21 5
361 401.48 humidity 70.0 90 > th dose independent rect. 16 3
363 401.48 radiation 20.0 720 < th dose dependent rect. 16 1
365 401.49 radiation 1.0 14400 < th dose independent rect. 18 10
367 401.50 temperature 25.0 30 > th dose dependent rect. 17 13
371 401.53 temperature 25.0 30 > th dose dependent rect. 17 11
374 401.55 precipitation 0.1 30 > th dose independent rect. 3 15
386 401.60 temperature 25.0 30 < th dose dependent rect. 17 5
404 401.70 radiation 20.0 720 < th dose dependent rect. 16 10
412 401.73 atmosphere 1010.0 10 < th dose dependent rect. 24 4
418 401.79 atmosphere 1005.0 720 < th dose independent rect. 21 1
421 401.81 temperature 30.0 10 < th dose dependent sin 15 NA
436 401.87 wind 7.0 4320 > th dose independent rect. 3 1
437 401.88 wind 7.0 4320 > th dose dependent rect. 3 1
466 402.01 atmosphere 1010.0 10 < th dose dependent rect. 24 7
469 402.04 wind 9.0 43200 > th dose dependent rect. 15 1
485 402.18 precipitation 0.1 30 > th dose dependent rect. 3 15
505 402.27 humidity 70.0 720 > th dose independent rect. 16 10
515 402.32 humidity 50.0 720 > th dose independent rect. 16 10
531 402.39 temperature 20.0 10 > th dose independent rect. 1 1
561 402.54 temperature 15.0 14400 > th dose independent rect. 5 1
565 402.55 temperature 15.0 14400 < th dose independent rect. 4 1
567 402.55 humidity 70.0 90 > th dose independent rect. 16 15
574 402.58 wind 9.0 4320 > th dose dependent rect. 16 1
582 402.62 radiation 10.0 14400 < th dose independent rect. 9 2
588 402.64 wind 1.0 14400 < th dose independent rect. 19 7
593 402.65 temperature 30.0 720 < th dose independent rect. 16 10
613 402.73 humidity 70.0 720 > th dose independent rect. 16 16
615 402.75 precipitation 0.1 10 < th dose independent sin 23 NA
617 402.75 precipitation 0.1 10 < th dose dependent sin 23 NA
618 402.75 temperature 20.0 90 < th dose dependent rect. 20 1
621 402.77 wind 1.0 43200 > th dose independent rect. 15 10
629 402.80 wind 7.0 4320 < th dose independent rect. 24 9
635 402.82 temperature 10.0 10 > th dose dependent sin 13 NA
637 402.82 wind 9.0 4320 > th dose dependent rect. 17 14
650 402.87 temperature 30.0 10 < th dose dependent rect. 16 18
661 402.90 temperature 10.0 270 > th dose dependent sin 13 NA
671 402.93 temperature 20.0 14400 < th dose independent rect. 15 1
725 403.06 temperature 30.0 720 < th dose independent rect. 16 12
744 403.10 wind 5.0 4320 > th dose independent rect. 19 10
746 403.10 wind 9.0 4320 > th dose dependent rect. 17 6
750 403.11 wind 9.0 4320 > th dose independent rect. 16 1
777 403.18 temperature 30.0 720 < th dose independent rect. 16 1
789 403.21 wind 1.0 43200 < th dose dependent rect. 14 8
790 403.22 temperature 20.0 14400 > th dose independent rect. 13 1
798 403.23 wind 3.0 43200 > th dose dependent rect. 21 4
810 403.26 wind 9.0 4320 < th dose independent rect. 18 4
813 403.26 radiation 1.0 4320 < th dose dependent rect. 18 4
819 403.28 humidity 50.0 720 > th dose dependent rect. 16 1
822 403.29 radiation 1.0 4320 < th dose dependent rect. 18 1
828 403.31 temperature 30.0 270 < th dose dependent rect. 17 1
850 403.35 wind 5.0 4320 > th dose dependent rect. 18 10
852 403.36 temperature 15.0 720 > th dose dependent rect. 18 1
864 403.38 wind 1.0 43200 < th dose independent rect. 14 10
868 403.39 wind 9.0 4320 > th dose independent rect. 18 4
871 403.39 wind 9.0 43200 > th dose dependent rect. 12 1
877 403.40 wind 9.0 4320 > th dose dependent rect. 17 9
936 403.55 temperature 25.0 90 < th dose independent rect. 16 5
942 403.56 wind 3.0 14400 > th dose independent rect. 13 1
950 403.57 temperature 20.0 10 > th dose independent rect. 1 6
974 403.64 wind 5.0 4320 < th dose independent rect. 19 10
976 403.65 precipitation 0.1 10 > th dose independent sin 23 NA