BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0224900 Os08g0224900|Os08g0224900
         (217 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22230.1  | chr2:9450042-9451427 FORWARD LENGTH=221            150   6e-37
AT5G10160.1  | chr5:3185819-3187159 FORWARD LENGTH=220            147   4e-36

>AT2G22230.1 | chr2:9450042-9451427 FORWARD LENGTH=221
          Length = 220

 Score =  150 bits (378), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 75/77 (97%)

Query: 1   MAQVGGLVMLQPEIGGSRDNFFFAGIDKVRFRKPVIAGDTLIMRMTLTKYQKRFGLAKME 60
           MAQVGG+VMLQPE+GGS+DNFFFAGIDKVRFRKPVIAGDTL+MRMTL K+QKRFGLAKME
Sbjct: 138 MAQVGGIVMLQPEVGGSQDNFFFAGIDKVRFRKPVIAGDTLVMRMTLLKFQKRFGLAKME 197

Query: 61  GKAYVGGDLVCEGEFLL 77
           GKAYVGG LVCEGEF++
Sbjct: 198 GKAYVGGALVCEGEFMM 214



>AT5G10160.1 | chr5:3185819-3187159 FORWARD LENGTH=220
          Length = 219

 Score =  147 bits (372), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 67/83 (80%), Positives = 74/83 (89%)

Query: 1   MAQVGGLVMLQPEIGGSRDNFFFAGIDKVRFRKPVIAGDTLIMRMTLTKYQKRFGLAKME 60
           MAQVGG+VMLQPE+GGSR NFFFAGIDKVRFRKPVIAGDTL+MRMTL K QKRFG+AKME
Sbjct: 137 MAQVGGIVMLQPEVGGSRSNFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKME 196

Query: 61  GKAYVGGDLVCEGEFLLRKEHDE 83
           GKAYVG  +VCEGEFL+    +E
Sbjct: 197 GKAYVGNSVVCEGEFLMAMGKEE 219



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,585,455
Number of extensions: 178696
Number of successful extensions: 397
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 2
Length of query: 217
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 123
Effective length of database: 8,529,465
Effective search space: 1049124195
Effective search space used: 1049124195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)