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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0225000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0184) R2 : 0.0217
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.123 (0.0388) R2dN8 : 0.0281 R2N8 : 0.0217
σ : 0.347
deviance : 55.21
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.3 0.334 1760 -10800 0.0645 515000 -0.226 -3150000 0.14 1.71 995 10 -- --
51.34 0.336 2.9 0.108 0.0642 1.65 -0.226 -- 0.14 1.68 995 10 -- --
51.5 0.334 1760 -10800 0.0645 515000 -- -3150000 0.141 1.47 995 10 -- --
51.49 0.334 2.9 0.108 0.0642 1.6 -- -- 0.14 1.43 994.9 10 -- --
51.75 0.335 1760 -10800 -- 515000 -- -3150000 0.143 -- 995 10 -- --
54.35 0.346 2.9 0.119 0.0513 -- -0.258 -- 0.135 1.69 -- -- -- --
54.58 0.346 2.9 0.127 0.0543 -- -- -- 0.137 0.112 -- -- -- --
51.74 0.335 2.9 0.117 -- 1.57 -- -- 0.143 -- 994.9 12 -- --
51.83 0.335 2.9 -- 0.0692 1.61 -- -- 0.133 1.5 994.9 15 -- --
54.77 0.346 2.9 0.129 -- -- -- -- 0.138 -- -- -- -- --
55.01 0.347 2.91 -- 0.056 -- -- -- 0.123 0.238 -- -- -- --
52.1 0.336 2.9 -- -- 1.59 -- -- 0.13 -- 994.9 14 -- --
55.21 0.347 2.9 -- -- -- -- -- 0.123 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.77 atmosphere 995.0 30 > th dose independent rect. 3 23
5 46.36 wind 1.0 30 < th dose independent rect. 2 1
6 46.36 wind 3.0 30 < th dose dependent rect. 2 1
7 46.36 atmosphere 1005.0 30 > th dose dependent rect. 2 1
11 46.37 temperature 20.0 30 > th dose dependent rect. 2 1
14 46.38 temperature 25.0 30 < th dose independent rect. 2 1
16 46.38 temperature 10.0 30 > th dose dependent rect. 2 1
18 46.38 atmosphere 995.0 30 > th dose dependent rect. 2 1
21 46.39 temperature 10.0 30 > th dose independent rect. 2 1
25 46.39 humidity 50.0 30 > th dose independent rect. 2 1
30 46.39 atmosphere 995.0 30 > th dose independent rect. 2 1
31 46.39 atmosphere 1005.0 30 > th dose independent rect. 2 1
32 46.39 atmosphere 1010.0 30 < th dose independent rect. 2 1
34 46.39 radiation 1.0 30 < th dose independent rect. 2 1
39 46.39 precipitation 0.1 30 < th dose independent rect. 2 1
40 46.39 temperature 10.0 30 > th dose independent rect. 3 23
41 46.39 humidity 50.0 30 > th dose dependent rect. 2 1
45 46.39 radiation 1.0 30 < th dose dependent rect. 2 1
50 46.39 precipitation 0.1 30 < th dose dependent rect. 2 1
53 46.41 atmosphere 1015.0 30 < th dose dependent rect. 2 1
54 46.42 temperature 30.0 30 < th dose dependent rect. 2 1
61 46.51 wind 1.0 30 > th dose independent rect. 2 1
72 46.55 wind 9.0 30 < th dose independent rect. 3 23
80 46.57 temperature 25.0 90 > th dose dependent rect. 1 3
108 46.65 precipitation 0.1 30 < th dose independent rect. 3 23
109 46.65 precipitation 0.1 30 < th dose dependent rect. 3 23
110 46.69 temperature 25.0 90 > th dose independent rect. 1 3
126 47.35 wind 9.0 1440 < th dose independent rect. 3 1
127 47.35 temperature 10.0 1440 > th dose independent rect. 3 1
130 47.35 temperature 30.0 1440 < th dose independent rect. 3 1
134 47.35 humidity 50.0 1440 > th dose independent rect. 3 1
143 47.35 atmosphere 995.0 1440 > th dose independent rect. 3 1
144 47.35 radiation 1.0 1440 < th dose independent rect. 3 1
164 47.35 temperature 10.0 1440 > th dose independent rect. 4 23
167 47.35 radiation 1.0 1440 < th dose dependent rect. 3 1
203 48.61 humidity 50.0 30 > th dose independent rect. 3 23
257 49.59 atmosphere 1015.0 30 < th dose independent rect. 3 23
300 50.23 humidity 90.0 90 < th dose independent rect. 2 1
359 50.76 temperature 30.0 30 < th dose independent rect. 3 23
379 50.96 atmosphere 1000.0 10 > th dose independent rect. 14 12
386 50.98 wind 9.0 30 < th dose dependent rect. 3 23
390 51.02 atmosphere 1015.0 1440 < th dose independent rect. 3 1
433 51.10 atmosphere 995.0 10 > th dose independent rect. 12 14
459 51.25 wind 1.0 30 > th dose independent rect. 3 23
461 51.27 wind 1.0 10 > th dose independent sin 16 NA
462 51.27 wind 1.0 30 > th dose dependent rect. 2 1
465 51.29 atmosphere 995.0 10 > th dose independent sin 2 NA
472 51.30 atmosphere 995.0 30 > th dose independent sin 7 NA
485 51.34 atmosphere 995.0 720 > th dose independent rect. 3 12
512 51.40 atmosphere 995.0 720 > th dose independent rect. 23 16
521 51.42 temperature 10.0 30 > th dose dependent rect. 3 23
535 51.46 temperature 25.0 1440 < th dose independent rect. 1 1
537 51.46 atmosphere 1000.0 90 < th dose dependent rect. 15 2
556 51.54 atmosphere 995.0 10 < th dose independent sin 2 NA
557 51.54 atmosphere 995.0 30 < th dose dependent sin 2 NA
563 51.55 temperature 25.0 1440 > th dose independent rect. 1 1
564 51.55 atmosphere 995.0 10 < th dose dependent sin 20 NA
565 51.55 atmosphere 995.0 10 < th dose dependent sin 23 NA
570 51.55 atmosphere 995.0 10 < th dose dependent rect. 15 3
592 51.56 atmosphere 995.0 30 < th dose independent sin 7 NA
597 51.56 atmosphere 995.0 10 < th dose dependent sin 7 NA
628 51.58 atmosphere 995.0 90 < th dose independent rect. 15 2
650 51.58 atmosphere 995.0 10 < th dose dependent no NA NA
873 51.60 atmosphere 995.0 10 < th dose dependent sin 18 NA
878 51.61 atmosphere 995.0 90 < th dose dependent sin 5 NA
892 51.63 wind 1.0 30 < th dose dependent rect. 17 10
895 51.63 atmosphere 995.0 30 > th dose dependent rect. 3 23
902 51.64 wind 1.0 30 < th dose dependent rect. 21 6
908 51.65 atmosphere 995.0 10 < th dose independent sin 23 NA
911 51.65 atmosphere 995.0 720 > th dose independent rect. 21 18
916 51.65 atmosphere 995.0 10 < th dose dependent rect. 17 23
948 51.72 atmosphere 995.0 720 > th dose independent rect. 13 2
955 51.73 wind 1.0 10 > th dose independent rect. 5 23
965 51.75 humidity 90.0 90 < th dose independent rect. 1 4
966 51.75 wind 9.0 720 < th dose independent rect. 15 12
967 51.75 atmosphere 995.0 10 < th dose dependent sin 14 NA
982 51.77 atmosphere 995.0 720 > th dose independent rect. 5 10
983 51.77 atmosphere 995.0 30 > th dose independent rect. 1 23