BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0225000 Os08g0225000|Os08g0225000
         (150 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0225000  Similar to (3R)-hydroxymyristoyl-[acyl carrier...   223   4e-59
Os05g0435700  Similar to (3R)-hydroxymyristoyl-[acyl carrier...   147   2e-36

>Os08g0225000 Similar to (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
           (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase)
          Length = 150

 Score =  223 bits (568), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 43  VARRAAGDGQAVEAQEALPIEKRFPPFPSVMDINQIREILPHRFPFLLVDRVIEYKGGEY 102
           VARRAAGDGQAVEAQEALPIEKRFPPFPSVMDINQIREILPHRFPFLLVDRVIEYKGGEY
Sbjct: 43  VARRAAGDGQAVEAQEALPIEKRFPPFPSVMDINQIREILPHRFPFLLVDRVIEYKGGEY 102

Query: 103 AVGIKNVTINDNFFPGHFPERPIMPGVLMVESEHIDTQFIHFQGTNLI 150
           AVGIKNVTINDNFFPGHFPERPIMPGVLMVESEHIDTQFIHFQGTNLI
Sbjct: 103 AVGIKNVTINDNFFPGHFPERPIMPGVLMVESEHIDTQFIHFQGTNLI 150



>Os05g0435700 Similar to (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
           (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase)
          Length = 215

 Score =  147 bits (372), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/75 (92%), Positives = 74/75 (98%)

Query: 60  LPIEKRFPPFPSVMDINQIREILPHRFPFLLVDRVIEYKGGEYAVGIKNVTINDNFFPGH 119
           +PIEKRFPPFP+VMDINQIR+ILPHRFPFLLVDRVI+YK GEYAVGIKNVTINDNFFPGH
Sbjct: 59  MPIEKRFPPFPAVMDINQIRDILPHRFPFLLVDRVIDYKPGEYAVGIKNVTINDNFFPGH 118

Query: 120 FPERPIMPGVLMVES 134
           FPERPIMPGVLMVE+
Sbjct: 119 FPERPIMPGVLMVEA 133



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.145    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,108,277
Number of extensions: 160443
Number of successful extensions: 411
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 58
Effective length of database: 12,232,113
Effective search space: 709462554
Effective search space used: 709462554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 151 (62.8 bits)