BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0435100 Os05g0435100|Os05g0435100
(240 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0435100 Protein of unknown function DUF1218 family pro... 303 1e-82
Os05g0433400 Protein of unknown function DUF1218 family pro... 148 4e-36
Os05g0434200 Protein of unknown function DUF1218 family pro... 144 7e-35
Os05g0434600 143 1e-34
Os05g0433100 Protein of unknown function DUF1218 family pro... 126 1e-29
Os05g0435300 Protein of unknown function DUF1218 family pro... 120 1e-27
Os05g0433500 105 2e-23
Os05g0433600 100 6e-22
Os06g0114700 Protein of unknown function DUF1218 family pro... 77 1e-14
Os05g0433900 73 1e-13
>Os05g0435100 Protein of unknown function DUF1218 family protein
Length = 240
Score = 303 bits (775), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 161/205 (78%), Positives = 161/205 (78%)
Query: 1 MDKTVAIVSAIVGPLGVLSAILGFSAEGTKIIISDVLLIGDECLYPQNPSFALGICAAIF 60
MDKTVAIVSAIVGPLGVLSAILGFSAEGTKIIISDVLLIGDECLYPQNPSFALGICAAIF
Sbjct: 1 MDKTVAIVSAIVGPLGVLSAILGFSAEGTKIIISDVLLIGDECLYPQNPSFALGICAAIF 60
Query: 61 LLMAQITVTAVXXXXXXXKSRAIPSETKRIVGIVCAVVSWIAAGVAWVLFVVGAAWNANV 120
LLMAQITVTAV KSRAIPSETKRIVGIVCAVVSWIAAGVAWVLFVVGAAWNANV
Sbjct: 61 LLMAQITVTAVGGCCGCCKSRAIPSETKRIVGIVCAVVSWIAAGVAWVLFVVGAAWNANV 120
Query: 121 ARDTAPDXXXXXXXXXXXXXXXXXXXSYVTLRGQRNEAVRTPKPGEQQPTPAAGIAMGHX 180
ARDTAPD SYVTLRGQRNEAVRTPKPGEQQPTPAAGIAMGH
Sbjct: 121 ARDTAPDGIFAGAAVLALAATALGIASYVTLRGQRNEAVRTPKPGEQQPTPAAGIAMGHP 180
Query: 181 XXXXXXXXXXXXXXXXXGGDGRALN 205
GGDGRALN
Sbjct: 181 AAQLSPPVSAPPAPPQQGGDGRALN 205
>Os05g0433400 Protein of unknown function DUF1218 family protein
Length = 206
Score = 148 bits (373), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/193 (53%), Positives = 121/193 (62%), Gaps = 14/193 (7%)
Query: 1 MDKTVAIVSAIVGPLGVLSAILGFSAEGTKIIISDVLLIGDECLYPQNPSFALGICAAIF 60
MDKTV +VSA+VG LG+LSAILGF+AE TKI ISDV + GDECLYPQNPS LG+CAA+
Sbjct: 1 MDKTVIVVSAVVGSLGLLSAILGFAAESTKITISDVRVSGDECLYPQNPSLRLGLCAAVL 60
Query: 61 LLMAQITVTAVXXXXXXX---KSRAIP-SETKRIVGIVCAVVSWIAAGVAWVLFVVGAAW 116
LL+AQ+TV+A+ K R IP S+T R+VGIV AV SWIAA +A VLFV GAAW
Sbjct: 61 LLLAQVTVSAIGGCGCCCGNGKPRGIPSSKTNRVVGIVFAVASWIAAVIAVVLFVEGAAW 120
Query: 117 NANVARDTAP------DXXXXXXXXXXXXXXXXXXXSYVTLRGQRNEAVRTPKPGE---- 166
NANVARDTAP D SYV LR Q + G
Sbjct: 121 NANVARDTAPVCYFLKDGVFAAAAVLALAATALGVASYVMLRRQLPDDDDDAPAGAVASW 180
Query: 167 QQPTPAAGIAMGH 179
+QP +GIAMGH
Sbjct: 181 RQPLLHSGIAMGH 193
>Os05g0434200 Protein of unknown function DUF1218 family protein
Length = 122
Score = 144 bits (362), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 91/113 (80%), Gaps = 6/113 (5%)
Query: 1 MDKTVAIVSAIVGPLGVLSAILGFSAEGTKIIISDVLLIGDECLYPQNPSFALGICAAIF 60
MDKT IVSA+VG LG+LSAILGFSAEGTKI ++D+L +G +CLYP+NP+ ALG+CAA+F
Sbjct: 1 MDKTTIIVSAVVGSLGLLSAILGFSAEGTKITVTDIL-VGGKCLYPENPATALGVCAAVF 59
Query: 61 LLMAQITVTAVXXXXXXXKSRAIPSETKRIVGIVCAVVSW-----IAAGVAWV 108
LL+AQITV+AV KSR+IPSETKRI+G++CAV+SW I AG W+
Sbjct: 60 LLLAQITVSAVGGCCGCCKSRSIPSETKRIIGVICAVMSWLVTADITAGTVWL 112
>Os05g0434600
Length = 204
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 113/196 (57%), Gaps = 24/196 (12%)
Query: 1 MDKTVAIVSAIVGPLGVLSAILGFSAEGTKIIISDVLL-IGDECLYPQNPSFALGICAAI 59
MDKT I SA+VG LG+LSAILGFSAE TKI +DVL+ ECLYPQNP+ LG+CAA+
Sbjct: 5 MDKTTIIASAVVGSLGLLSAILGFSAEVTKITATDVLVGARGECLYPQNPAAELGVCAAV 64
Query: 60 FLLMAQITVTAVXXXXXXXKS-RAIPSETKRIVGIVCAVVSWIA---------AGVAWVL 109
FLL+ QITV+AV S R+IPSETKRI+G+VCAV+SW+ +G+AW L
Sbjct: 65 FLLLVQITVSAVGGCCGCCMSGRSIPSETKRIIGVVCAVMSWLVTTDITAGTDSGIAWFL 124
Query: 110 FVVGAAWNANVARDTAPDXXXXX------XXXXXXXXXXXXXXSYVTLRGQRNEAVRTPK 163
F VGA N T PD SYV LR Q +EA
Sbjct: 125 FGVGAVVNIEGKGATMPDCYVVKRGIFAGAAVLALAATAFGITSYVMLRTQADEA----- 179
Query: 164 PGEQQPTPAAGIAMGH 179
P ++ P AG+AMG
Sbjct: 180 PAKKPPL--AGVAMGQ 193
>Os05g0433100 Protein of unknown function DUF1218 family protein
Length = 198
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 84/113 (74%), Gaps = 11/113 (9%)
Query: 1 MDKTVAIVSAIVGPLGVLSAILGFSAEGTKIIISDVLLIGDECLYPQ-NPS-FALGICAA 58
MDKT IVS +VG LG+LSAILGF+AEG+K+ CLY NPS LG+CAA
Sbjct: 19 MDKTTIIVSVVVGSLGLLSAILGFAAEGSKL---------TSCLYSSTNPSALGLGVCAA 69
Query: 59 IFLLMAQITVTAVXXXXXXXKSRAIPSETKRIVGIVCAVVSWIAAGVAWVLFV 111
IFL+MAQ+TVTAV KSRAIPSETKRIVG+VCAV+SWIAA +A+V+F+
Sbjct: 70 IFLVMAQVTVTAVGGCCGCCKSRAIPSETKRIVGVVCAVISWIAAVIAFVMFL 122
>Os05g0435300 Protein of unknown function DUF1218 family protein
Length = 220
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 83/126 (65%)
Query: 1 MDKTVAIVSAIVGPLGVLSAILGFSAEGTKIIISDVLLIGDECLYPQNPSFALGICAAIF 60
M+ V +VSA+VG V SA+LGF AE K+ D+ + EC YP N +F LGICA +
Sbjct: 1 METGVFVVSAVVGLFAVASAVLGFIAEEKKLTPEDIDVSSGECEYPANAAFVLGICAVLL 60
Query: 61 LLMAQITVTAVXXXXXXXKSRAIPSETKRIVGIVCAVVSWIAAGVAWVLFVVGAAWNANV 120
L +AQI V++V + RA SE++R+ GIVC+V SWIAA VA V FV GAAWNA V
Sbjct: 61 LAVAQIIVSSVAGCCGCCRPRAGASESRRVTGIVCSVFSWIAAIVAGVSFVQGAAWNAPV 120
Query: 121 ARDTAP 126
RDTAP
Sbjct: 121 TRDTAP 126
>Os05g0433500
Length = 256
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 75/114 (65%), Gaps = 13/114 (11%)
Query: 1 MDKTVAIVSAIVGPLGVLSAILGFSAEGTKIIISDVLLIGDECLYPQNPSFALGICAAIF 60
MDKT IVS++VG LGVLSAILGF+AE K +C S L I A IF
Sbjct: 29 MDKTTIIVSSVVGSLGVLSAILGFAAEAAKF---------TDC----ASSLGLAIAATIF 75
Query: 61 LLMAQITVTAVXXXXXXXKSRAIPSETKRIVGIVCAVVSWIAAGVAWVLFVVGA 114
L+MAQ+TV AV KSRA+PSETKRIVG+VCA +SW+AA +A+ LFV G+
Sbjct: 76 LMMAQVTVAAVGGCCGCCKSRAVPSETKRIVGVVCASISWVAAVIAFALFVDGS 129
>Os05g0433600
Length = 289
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 1 MDKTVAIVSAIVGPLGVLSAILGFSAEGTKIIISDVLLIGD--ECLYPQNPSFA---LGI 55
MDKT IVSA+VG LG+LSAILGF+AE + + D + Y N S A LG+
Sbjct: 23 MDKTTIIVSAVVGSLGLLSAILGFAAEVIIYVFNFQRCELDLYDLYYSSNSSSAAVGLGV 82
Query: 56 CAAIFLLMAQITVTAVXXXXXXXKSRAIPSETKRIVGIVCAVVSWIAAGVAWVLFVVGAA 115
C AI L++ Q+TV A+ KSRAIPSETKRIVG+VCAV SWI A +A+VLF+ GA
Sbjct: 83 CGAILLVITQVTVAAIGGCCGCCKSRAIPSETKRIVGVVCAVFSWITAVIAFVLFLDGAI 142
Query: 116 WNAN 119
+N
Sbjct: 143 VESN 146
>Os06g0114700 Protein of unknown function DUF1218 family protein
Length = 205
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
Query: 1 MDKTVAIVSAIVGPLGVLSAILGFSAEGTKIIISDVLLIGD-ECLYPQNPSFALGICAAI 59
M++ V +V A+VG LGVLSA LGF+AEGT++ +SDV +C+YP++P+ ALG+ +A+
Sbjct: 1 MERKVVVVCAVVGFLGVLSAALGFAAEGTRVKVSDVQTSSPGQCIYPRSPALALGLISAV 60
Query: 60 FLLMAQITVTAVXXXXXXXKSRAIPSETKRIVGIVCAVVSWIAAGVAWVLFVVGAAWN 117
L++AQ + V K +PS+T V ++ +VSW +A++L + GAA N
Sbjct: 61 ALMVAQSIINTV-AGCICCKRHPVPSDTNWSVALISFIVSWATFIIAFLLLLTGAALN 117
>Os05g0433900
Length = 294
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 66/112 (58%), Gaps = 17/112 (15%)
Query: 1 MDKTVAIVSAIVGPLGVLSAILGFSAEGTKIIISDVLLIGDECLYPQNPSFALGICAAIF 60
MDKT IVSA+ LG LSAILGF+A+ K +C + + + A+IF
Sbjct: 1 MDKTTVIVSAVAASLGALSAILGFAADAAK---------HSDC----ASALGMAVAASIF 47
Query: 61 LLMAQITVTAVXXXXXXXKSRAI-PSETKRIVGIVCAVVSWIAAGVAWVLFV 111
L+MA++TV A +SRA+ PS TKR V + CA +SWIA +A+V+F+
Sbjct: 48 LMMAKVTVAA---GGGCRESRAVVPSATKRTVAVACAAISWIATVIAFVMFL 96
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,481,612
Number of extensions: 167814
Number of successful extensions: 382
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 10
Length of query: 240
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 142
Effective length of database: 11,918,829
Effective search space: 1692473718
Effective search space used: 1692473718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)