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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0433400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1218 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.63 (0.0277) R2 : 0.382
β1 : 1.36 (0.113) R2dD : 0.264 R2D : 0.0676
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.47 (0.121) R2dE : 0.276 R2E : 0.0876
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.148 (0.0626) R2dN8 : 0.0118 R2N8 : 0.0543
σ : 0.508
deviance : 119
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 9.132
memory length : 3799
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
115.79 0.506 4.62 1.39 0.209 -1.42 -0.414 0.131 -0.143 14 10.94 3757 -- --
115.79 0.501 4.63 1.36 0.21 -1.43 -0.412 -- -0.147 14 10.36 3742 -- --
116.41 0.503 4.62 1.38 0.215 -1.41 -- 0.229 -0.139 14.2 10.44 3694 -- --
116.46 0.503 4.63 1.34 0.213 -1.43 -- -- -0.152 14.2 10.18 3709 -- --
118.98 0.508 4.62 1.38 -- -1.47 -- 0.127 -0.14 -- 10.3 3794 -- --
150.82 0.576 4.69 0.746 0.315 -- -0.389 -- -0.424 13.5 -- -- -- --
151.43 0.576 4.69 0.733 0.315 -- -- -- -0.426 13.5 -- -- -- --
119 0.508 4.63 1.36 -- -1.47 -- -- -0.148 -- 9.132 3799 -- --
149.21 0.572 4.67 -- 0.648 -1.24 -- -- -0.361 13.9 10.18 3709 -- --
157.53 0.586 4.69 0.721 -- -- -- -- -0.433 -- -- -- -- --
165.6 0.602 4.71 -- 0.302 -- -- -- -0.508 13.4 -- -- -- --
150.21 0.571 4.68 -- -- -0.749 -- -- -0.385 -- 22.1 2502 -- --
171.23 0.611 4.71 -- -- -- -- -- -0.513 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 110.15 precipitation 0.1 43200 > th dose dependent rect. 20 2
2 110.60 wind 9.0 43200 < th dose independent rect. 19 2
4 110.87 wind 9.0 43200 > th dose independent rect. 19 2
5 111.14 wind 7.0 43200 > th dose dependent rect. 19 2
6 111.14 wind 9.0 43200 > th dose dependent rect. 19 4
12 111.97 wind 9.0 43200 > th dose dependent rect. 19 6
14 112.11 wind 9.0 43200 > th dose dependent rect. 19 8
15 112.16 precipitation 0.1 43200 > th dose independent rect. 20 1
18 112.24 precipitation 0.1 43200 < th dose independent rect. 20 1
19 112.24 precipitation 0.1 43200 < th dose dependent rect. 20 1
25 112.63 radiation 1.0 43200 < th dose dependent rect. 21 4
26 112.73 wind 9.0 43200 > th dose independent rect. 19 6
37 113.04 wind 9.0 43200 > th dose independent rect. 19 8
48 113.52 wind 9.0 43200 < th dose independent rect. 19 6
51 113.59 atmosphere 1000.0 43200 < th dose dependent rect. 4 1
61 113.87 wind 9.0 43200 < th dose independent rect. 19 8
65 113.97 wind 9.0 43200 > th dose dependent rect. 17 13
69 114.04 wind 9.0 43200 > th dose dependent rect. 17 8
76 114.14 wind 9.0 43200 > th dose dependent rect. 17 10
94 114.47 radiation 1.0 43200 < th dose dependent rect. 23 1
108 114.80 temperature 10.0 720 > th dose dependent rect. 17 18
131 115.21 radiation 30.0 4320 < th dose independent rect. 15 17
136 115.26 radiation 1.0 4320 < th dose independent rect. 16 14
142 115.33 radiation 1.0 4320 > th dose independent rect. 16 14
147 115.42 precipitation 0.1 43200 > th dose dependent rect. 17 2
151 115.47 atmosphere 995.0 43200 < th dose independent rect. 16 6
155 115.56 atmosphere 995.0 43200 > th dose independent rect. 16 6
156 115.59 wind 1.0 43200 < th dose dependent rect. 20 1
157 115.59 atmosphere 995.0 43200 < th dose dependent rect. 16 6
166 115.73 radiation 1.0 4320 < th dose independent rect. 17 7
169 115.75 radiation 1.0 4320 < th dose independent rect. 17 3
174 115.78 radiation 1.0 4320 < th dose independent rect. 17 10
178 115.79 radiation 1.0 4320 > th dose independent rect. 17 2
208 115.84 precipitation 0.1 43200 > th dose independent rect. 17 2
211 115.90 precipitation 0.1 43200 < th dose independent rect. 17 2
212 115.90 precipitation 0.1 43200 < th dose dependent rect. 17 2
215 115.93 temperature 15.0 720 > th dose dependent rect. 17 21
234 116.02 temperature 20.0 4320 > th dose dependent rect. 13 1
270 116.12 temperature 10.0 4320 > th dose dependent rect. 13 1
272 116.16 temperature 10.0 4320 > th dose dependent rect. 24 18
274 116.17 atmosphere 995.0 43200 < th dose dependent rect. 14 2
275 116.18 temperature 10.0 4320 > th dose dependent rect. 11 20
289 116.24 temperature 30.0 4320 < th dose dependent rect. 17 1
305 116.28 atmosphere 1000.0 43200 < th dose independent rect. 3 1
306 116.28 atmosphere 995.0 43200 < th dose independent rect. 14 1
386 116.44 humidity 80.0 43200 > th dose dependent rect. 19 2
399 116.46 temperature 10.0 4320 > th dose dependent no NA NA
401 116.46 temperature 20.0 4320 > th dose dependent rect. 11 7
411 116.46 temperature 10.0 4320 > th dose dependent rect. 15 23
424 116.48 temperature 10.0 4320 > th dose dependent rect. 3 23
425 116.48 temperature 10.0 4320 > th dose dependent rect. 17 23
441 116.51 radiation 20.0 4320 < th dose dependent rect. 18 6
488 116.56 temperature 10.0 4320 > th dose dependent sin 4 NA
495 116.57 atmosphere 995.0 43200 < th dose independent rect. 18 1
499 116.57 atmosphere 995.0 43200 < th dose dependent rect. 18 1
508 116.57 temperature 30.0 4320 < th dose dependent rect. 13 18
538 116.60 temperature 10.0 4320 > th dose dependent rect. 24 1
539 116.60 temperature 30.0 4320 < th dose dependent rect. 6 1
561 116.62 temperature 10.0 4320 > th dose dependent sin 17 NA
562 116.62 temperature 10.0 4320 > th dose dependent rect. 6 1
585 116.64 atmosphere 995.0 43200 < th dose independent rect. 12 4
588 116.64 precipitation 0.1 43200 > th dose dependent rect. 14 5
594 116.65 temperature 20.0 4320 > th dose dependent rect. 15 3
609 116.66 atmosphere 995.0 43200 > th dose independent rect. 12 3
611 116.66 temperature 10.0 4320 > th dose dependent rect. 12 7
638 116.68 temperature 20.0 4320 > th dose dependent rect. 17 1
656 116.69 temperature 10.0 4320 > th dose dependent rect. 17 1
687 116.71 temperature 30.0 4320 < th dose dependent rect. 24 1
689 116.71 precipitation 0.1 43200 > th dose dependent rect. 17 5
703 116.72 radiation 10.0 4320 < th dose dependent rect. 18 11
713 116.73 atmosphere 995.0 43200 > th dose independent rect. 17 3
733 116.74 atmosphere 1000.0 43200 > th dose independent rect. 3 1
734 116.74 atmosphere 995.0 43200 > th dose independent rect. 17 1
761 116.75 temperature 30.0 4320 < th dose dependent rect. 23 20
834 116.79 atmosphere 995.0 43200 > th dose independent rect. 11 5
915 116.83 temperature 10.0 1440 > th dose dependent rect. 4 5
936 116.84 temperature 30.0 1440 < th dose dependent rect. 4 5
957 116.84 temperature 30.0 4320 < th dose dependent rect. 15 23
961 116.85 wind 5.0 43200 > th dose independent rect. 18 7
962 116.85 temperature 20.0 4320 > th dose dependent sin 20 NA
963 116.85 temperature 30.0 4320 < th dose dependent sin 15 NA
980 116.85 temperature 10.0 720 > th dose dependent rect. 15 23