BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0427300 Os05g0427300|AK120426
(187 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0427300 Similar to RNA binding protein (Fragment) 344 2e-95
Os01g0876500 RNA-binding region RNP-1 (RNA recognition moti... 155 1e-38
Os10g0457000 RNA-binding region RNP-1 (RNA recognition moti... 85 3e-17
>Os05g0427300 Similar to RNA binding protein (Fragment)
Length = 187
Score = 344 bits (883), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 171/187 (91%), Positives = 171/187 (91%)
Query: 1 MSRNPGCTVFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEI 60
MSRNPGCTVFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEI
Sbjct: 1 MSRNPGCTVFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEI 60
Query: 61 AQYAVKLFSGLVRLHNRTLRFAISGQDKQSSNGXXXXXXXXXXXXXXXXAQLMRSSDTPA 120
AQYAVKLFSGLVRLHNRTLRFAISGQDKQSSNG AQLMRSSDTPA
Sbjct: 61 AQYAVKLFSGLVRLHNRTLRFAISGQDKQSSNGNIPVTPKVNPIPPPKPAQLMRSSDTPA 120
Query: 121 SQHTVVNGRIAGISPNHSYSAHSEAPSGISSRGLSNGTYEYSRRVFGSVLNDVSRRTDRQ 180
SQHTVVNGRIAGISPNHSYSAHSEAPSGISSRGLSNGTYEYSRRVFGSVLNDVSRRTDRQ
Sbjct: 121 SQHTVVNGRIAGISPNHSYSAHSEAPSGISSRGLSNGTYEYSRRVFGSVLNDVSRRTDRQ 180
Query: 181 PIPYPSY 187
PIPYPSY
Sbjct: 181 PIPYPSY 187
>Os01g0876500 RNA-binding region RNP-1 (RNA recognition motif) domain
containing protein
Length = 100
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/93 (81%), Positives = 84/93 (90%)
Query: 1 MSRNPGCTVFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEI 60
M+RNP TV+IGNLDEKV ER+LYEILIQ GRVVDL IPRDKET+ KGYAFAEYETEEI
Sbjct: 1 MARNPTRTVYIGNLDEKVTERILYEILIQPGRVVDLCIPRDKETSCPKGYAFAEYETEEI 60
Query: 61 AQYAVKLFSGLVRLHNRTLRFAISGQDKQSSNG 93
AQYAV+LFSGLVRL+ +TL+FAISGQDK SSNG
Sbjct: 61 AQYAVQLFSGLVRLYGKTLKFAISGQDKPSSNG 93
>Os10g0457000 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 355
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Query: 3 RNPGCTVFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEIAQ 62
RN T ++GNLD +V E +L+E+ +Q G VV++++P+D+ TN +GY F E+ +EE A
Sbjct: 21 RNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDAD 80
Query: 63 YAVKLFSGLVRLHNRTLRFAISGQDKQS 90
YA+K+ + +++L+ + +R + QDK+S
Sbjct: 81 YAIKILN-MIKLYGKPIRVNKASQDKKS 107
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,628,402
Number of extensions: 208329
Number of successful extensions: 654
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 659
Number of HSP's successfully gapped: 3
Length of query: 187
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 92
Effective length of database: 12,075,471
Effective search space: 1110943332
Effective search space used: 1110943332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)