Os01g0876500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os01g0876500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.23 | 0.463 | 6.33 | -0.273 | 1.29 | 1.63 | -0.147 | 0.339 | 0.0765 | 16.5 | 20.1 | 4084 | -- | -- |
| 97.4 | 0.46 | 6.35 | -0.3 | 1.29 | 1.56 | -0.183 | -- | 0.0815 | 16.5 | 20.13 | 4025 | -- | -- |
| 97.27 | 0.459 | 6.33 | -0.272 | 1.29 | 1.62 | -- | 0.359 | 0.0768 | 16.5 | 20.1 | 4112 | -- | -- |
| 97.45 | 0.46 | 6.35 | -0.319 | 1.29 | 1.57 | -- | -- | 0.0662 | 16.5 | 20.16 | 4025 | -- | -- |
| 179.04 | 0.627 | 6.29 | 0.238 | -- | 0.957 | -- | -0.435 | 0.263 | -- | 20.1 | 4112 | -- | -- |
| 140.96 | 0.557 | 6.25 | 0.62 | 1.24 | -- | -0.00915 | -- | 0.491 | 16.6 | -- | -- | -- | -- |
| 140.96 | 0.556 | 6.25 | 0.62 | 1.24 | -- | -- | -- | 0.491 | 16.6 | -- | -- | -- | -- |
| 180.03 | 0.628 | 6.28 | 0.315 | -- | 0.981 | -- | -- | 0.28 | -- | 20.16 | 4025 | -- | -- |
| 97.65 | 0.46 | 6.33 | -- | 1.3 | 1.46 | -- | -- | 0.169 | 16.6 | 19.64 | 2780 | -- | -- |
| 222.47 | 0.697 | 6.24 | 0.573 | -- | -- | -- | -- | 0.459 | -- | -- | -- | -- | -- |
| 151.11 | 0.575 | 6.27 | -- | 1.23 | -- | -- | -- | 0.422 | 16.6 | -- | -- | -- | -- |
| 180.39 | 0.626 | 6.3 | -- | -- | 1.41 | -- | -- | 0.177 | -- | 20.2 | 1837 | -- | -- |
| 231.13 | 0.71 | 6.26 | -- | -- | -- | -- | -- | 0.395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.12 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 3 | 94.67 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 4 | 94.68 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 6 | 94.69 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 43 | 94.79 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 44 | 94.85 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 48 | 94.93 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 75 | 95.37 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 85 | 95.38 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 9 |
| 86 | 95.38 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 19 | 17 |
| 115 | 95.42 | radiation | 1.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 118 | 95.45 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 120 | 95.47 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 121 | 95.47 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 136 | 95.53 | radiation | 1.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 149 | 95.64 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 152 | 95.71 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 154 | 95.75 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 158 | 95.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 162 | 95.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 163 | 95.78 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 24 | 8 |
| 193 | 95.88 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 201 | 95.96 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 209 | 96.02 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 212 | 96.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 8 |
| 247 | 96.29 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 284 | 96.50 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 287 | 96.51 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 292 | 96.53 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 322 | 96.63 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 9 | 19 |
| 334 | 96.70 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 341 | 96.76 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 344 | 96.78 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 349 | 96.82 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 351 | 96.83 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 19 | 21 |
| 372 | 96.85 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 380 | 96.85 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 384 | 96.86 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 9 | 19 |
| 425 | 96.96 | temperature | 20.0 | 4320 | > th | dose independent | sin | 16 | NA |
| 504 | 97.11 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 524 | 97.15 | temperature | 20.0 | 4320 | < th | dose independent | sin | 16 | NA |
| 594 | 97.27 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 7 |
| 621 | 97.33 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 637 | 97.35 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 674 | 97.44 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 691 | 97.48 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 21 |
| 700 | 97.50 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 2 | 6 |
| 710 | 97.52 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 718 | 97.53 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 756 | 97.61 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 782 | 97.61 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 15 | 21 |
| 822 | 97.63 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 882 | 97.71 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 894 | 97.74 | temperature | 20.0 | 4320 | > th | dose independent | no | NA | NA |
| 896 | 97.74 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 11 |
| 902 | 97.74 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 20 |
| 909 | 97.75 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 2 | 22 |
| 936 | 97.78 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 938 | 97.79 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 985 | 97.85 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |