BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0876500 Os01g0876500|J053026A07
(100 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G10110.1 | chr4:6309606-6310809 REVERSE LENGTH=174 141 6e-35
AT2G18510.1 | chr2:8031554-8033517 REVERSE LENGTH=364 77 2e-15
AT1G71800.1 | chr1:26999606-27001850 FORWARD LENGTH=462 48 1e-06
AT1G73530.1 | chr1:27643801-27645386 REVERSE LENGTH=182 47 2e-06
AT1G49760.1 | chr1:18416740-18419753 FORWARD LENGTH=672 45 5e-06
AT5G19350.1 | chr5:6518978-6521295 FORWARD LENGTH=426 45 5e-06
AT5G44200.1 | chr5:17802062-17803875 REVERSE LENGTH=258 45 6e-06
>AT4G10110.1 | chr4:6309606-6310809 REVERSE LENGTH=174
Length = 173
Score = 141 bits (356), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 77/88 (87%)
Query: 8 TVYIGNLDEKVTERILYEILIQPGRVVDLCIPRDKETSCPKGYAFAEYETEEIAQYAVQL 67
TVYIGN+DE+V++R+LY+I+IQ GRV+DL IPRDKET PKG+AFAEYETEEIA YAV+L
Sbjct: 8 TVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKL 67
Query: 68 FSGLVRLYGKTLKFAISGQDKPSSNGNN 95
FSGLV LY +TLKFAISGQDK SN N
Sbjct: 68 FSGLVSLYNRTLKFAISGQDKLQSNSAN 95
>AT2G18510.1 | chr2:8031554-8033517 REVERSE LENGTH=364
Length = 363
Score = 77.0 bits (188), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
Query: 3 RNPTRTVYIGNLDEKVTERILYEILIQPGRVVDLCIPRDKETSCPKGYAFAEYETEEIAQ 62
RN TVY+G LD +++E +L+E+ +Q G VV++ +P+D+ T+ + Y F EY +EE A
Sbjct: 21 RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80
Query: 63 YAVQLFSGLVRLYGKTLKFAISGQDKPS 90
YA+++ + +++L+GK ++ + QDK S
Sbjct: 81 YAIKVLN-MIKLHGKPIRVNKASQDKKS 107
>AT1G71800.1 | chr1:26999606-27001850 FORWARD LENGTH=462
Length = 461
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 7 RTVYIGNLDEKVTERILYEILIQPGRVVDLCIPRDKETSCPKGYAFAEYETEEIAQYAVQ 66
R V++GN+ TE L EI + G VV + D+ET PKGY F EY+ EE A A +
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 68
Query: 67 LFSGLVRLYGKTLKFAISGQDK 88
+ G+ L+ + DK
Sbjct: 69 NLQSY-EINGRQLRVDFAENDK 89
>AT1G73530.1 | chr1:27643801-27645386 REVERSE LENGTH=182
Length = 181
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 5 PTRTVYIGNLDEKVTERILYEILIQPGRVVDLCIPRDKETSCPKGYAFAEYETEEIAQYA 64
P +Y+ L + TE L + Q G ++ + + DK + PKG+AF YETEE A A
Sbjct: 75 PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKA 134
Query: 65 VQLFSG 70
+Q G
Sbjct: 135 IQGMHG 140
>AT1G49760.1 | chr1:18416740-18419753 FORWARD LENGTH=672
Length = 671
Score = 45.4 bits (106), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 6 TRTVYIGNLDEKVTERILYEILIQPGRVVDLCIPRDKETSCPKGYAFAEYETEEIAQYAV 65
T ++Y+G+LD VT+ L+E Q G+VV + + RD T GY + Y T + A A+
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 66 QLFSGLVRLYGKTLKFAISGQD 87
+ + L G+ ++ S +D
Sbjct: 104 NELN-FMALNGRAIRVMYSVRD 124
>AT5G19350.1 | chr5:6518978-6521295 FORWARD LENGTH=426
Length = 425
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 7 RTVYIGNLDEKVTERILYEILIQPGRVVDLCIPRDKETSCPKGYAFAEYETEEIAQYAVQ 66
RT++IG+L V E L Q G +V + + R+K T P+GY F E+ + A+ +Q
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 67 LFSGLVRLYGKTLKFAIS 84
++G ++ G L F ++
Sbjct: 84 TYNG-TQMPGTELTFRLN 100
>AT5G44200.1 | chr5:17802062-17803875 REVERSE LENGTH=258
Length = 257
Score = 45.4 bits (106), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 8 TVYIGNLDEKVTERILYEILIQPGRVVDLCIPRDKETSCPKGYAFAEYETEEIAQYAVQL 67
TVYIGN+ TE LYE+ + G + + + DK T P G+ F + + E + AV+
Sbjct: 35 TVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKY 94
Query: 68 FSGLV 72
SG +
Sbjct: 95 ISGTI 99
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,211,067
Number of extensions: 78160
Number of successful extensions: 371
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 12
Length of query: 100
Length of database: 11,106,569
Length adjustment: 70
Effective length of query: 30
Effective length of database: 9,187,449
Effective search space: 275623470
Effective search space used: 275623470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)