BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0876500 Os01g0876500|J053026A07
         (100 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0876500  RNA-binding region RNP-1 (RNA recognition moti...   209   4e-55
Os05g0427300  Similar to RNA binding protein (Fragment)           158   9e-40
Os10g0457000  RNA-binding region RNP-1 (RNA recognition moti...    82   1e-16

>Os01g0876500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 100

 Score =  209 bits (531), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MARNPTRTVYIGNLDEKVTERILYEILIQPGRVVDLCIPRDKETSCPKGYAFAEYETEEI 60
           MARNPTRTVYIGNLDEKVTERILYEILIQPGRVVDLCIPRDKETSCPKGYAFAEYETEEI
Sbjct: 1   MARNPTRTVYIGNLDEKVTERILYEILIQPGRVVDLCIPRDKETSCPKGYAFAEYETEEI 60

Query: 61  AQYAVQLFSGLVRLYGKTLKFAISGQDKPSSNGNNPRIQW 100
           AQYAVQLFSGLVRLYGKTLKFAISGQDKPSSNGNNPRIQW
Sbjct: 61  AQYAVQLFSGLVRLYGKTLKFAISGQDKPSSNGNNPRIQW 100



>Os05g0427300 Similar to RNA binding protein (Fragment)
          Length = 187

 Score =  158 bits (399), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 78/96 (81%), Positives = 86/96 (89%)

Query: 1  MARNPTRTVYIGNLDEKVTERILYEILIQPGRVVDLCIPRDKETSCPKGYAFAEYETEEI 60
          M+RNP  TV+IGNLDEKV ER+LYEILIQ GRVVDL IPRDKET+  KGYAFAEYETEEI
Sbjct: 1  MSRNPGCTVFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEI 60

Query: 61 AQYAVQLFSGLVRLYGKTLKFAISGQDKPSSNGNNP 96
          AQYAV+LFSGLVRL+ +TL+FAISGQDK SSNGN P
Sbjct: 61 AQYAVKLFSGLVRLHNRTLRFAISGQDKQSSNGNIP 96



>Os10g0457000 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 355

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 62/88 (70%), Gaps = 1/88 (1%)

Query: 3   RNPTRTVYIGNLDEKVTERILYEILIQPGRVVDLCIPRDKETSCPKGYAFAEYETEEIAQ 62
           RN   T Y+GNLD +V+E +L+E+ +Q G VV++ +P+D+ T+  +GY F E+ +EE A 
Sbjct: 21  RNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDAD 80

Query: 63  YAVQLFSGLVRLYGKTLKFAISGQDKPS 90
           YA+++ + +++LYGK ++   + QDK S
Sbjct: 81  YAIKILN-MIKLYGKPIRVNKASQDKKS 107



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,229,425
Number of extensions: 109066
Number of successful extensions: 395
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 3
Length of query: 100
Length of database: 17,035,801
Length adjustment: 69
Effective length of query: 31
Effective length of database: 13,433,035
Effective search space: 416424085
Effective search space used: 416424085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)