Os05g0427300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA binding protein (Fragment).
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Os05g0427300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA binding protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.41 | 0.276 | 11.3 | 0.307 | 0.872 | 1.41 | -0.325 | -1.74 | -0.0325 | 17.2 | 5.157 | 806 | -- | -- |
| 35.43 | 0.277 | 11.3 | 0.311 | 1.17 | 1.84 | 0.724 | -- | -0.0173 | 17.6 | 4.296 | 806 | -- | -- |
| 34.43 | 0.273 | 11.3 | 0.306 | 0.903 | 1.46 | -- | -1.36 | -0.0343 | 17.3 | 4.6 | 809 | -- | -- |
| 36.85 | 0.283 | 11.3 | 0.256 | 0.889 | 1.4 | -- | -- | -0.0472 | 17.1 | 4.665 | 797 | -- | -- |
| 42.61 | 0.306 | 11.3 | 0.18 | -- | -0.214 | -- | 0.333 | -0.125 | -- | 4.6 | 809 | -- | -- |
| 40.53 | 0.298 | 11.3 | 0.202 | 0.322 | -- | -0.591 | -- | -0.113 | 9.62 | -- | -- | -- | -- |
| 41.7 | 0.302 | 11.3 | 0.182 | 0.324 | -- | -- | -- | -0.113 | 10.2 | -- | -- | -- | -- |
| 38.37 | 0.288 | 11.3 | 0.211 | -- | 0.729 | -- | -- | -0.0248 | -- | 4.903 | 1196 | -- | -- |
| 38.46 | 0.289 | 11.3 | -- | 0.777 | 1.24 | -- | -- | -0.0858 | 16.9 | 5.722 | 792 | -- | -- |
| 48.07 | 0.324 | 11.3 | 0.177 | -- | -- | -- | -- | -0.114 | -- | -- | -- | -- | -- |
| 42.58 | 0.305 | 11.3 | -- | 0.323 | -- | -- | -- | -0.133 | 10.1 | -- | -- | -- | -- |
| 39.6 | 0.293 | 11.3 | -- | -- | 0.619 | -- | -- | -0.0624 | -- | 5.788 | 1199 | -- | -- |
| 48.9 | 0.326 | 11.3 | -- | -- | -- | -- | -- | -0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.41 | radiation | 30 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 7 | 33.62 | radiation | 30 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 12 | 33.95 | radiation | 40 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 21 | 34.34 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 15 |
| 22 | 34.35 | radiation | 10 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 33 | 34.47 | radiation | 1 | 720 | > th | dose independent | sin | 19 | NA |
| 43 | 34.64 | radiation | 10 | 1440 | < th | dose independent | rect. | 24 | 5 |
| 51 | 34.81 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 63 | 34.85 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 75 | 34.94 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 100 | 34.98 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 113 | 35.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 117 | 35.17 | radiation | 10 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 131 | 35.22 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 14 |
| 144 | 35.36 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 15 |
| 147 | 35.37 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 10 |
| 164 | 35.43 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 168 | 35.44 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 8 |
| 174 | 35.46 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 16 |
| 177 | 35.47 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 20 |
| 181 | 35.49 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 200 | 35.52 | humidity | 80 | 90 | > th | dose independent | rect. | 5 | 15 |
| 211 | 35.56 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 3 |
| 227 | 35.58 | radiation | 1 | 720 | < th | dose independent | rect. | 19 | 23 |
| 228 | 35.58 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 244 | 35.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 10 |
| 245 | 35.62 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 6 |
| 249 | 35.63 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 250 | 35.63 | radiation | 10 | 720 | < th | dose dependent | rect. | 12 | 19 |
| 256 | 35.65 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 15 |
| 277 | 35.69 | temperature | 25 | 30 | > th | dose independent | rect. | 9 | 19 |
| 291 | 35.71 | temperature | 25 | 30 | < th | dose dependent | sin | 21 | NA |
| 296 | 35.73 | radiation | 1 | 270 | < th | dose dependent | rect. | 17 | 1 |
| 298 | 35.74 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 8 |
| 302 | 35.75 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 323 | 35.76 | temperature | 25 | 30 | > th | dose independent | rect. | 9 | 17 |
| 328 | 35.76 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 329 | 35.76 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 340 | 35.80 | temperature | 25 | 90 | < th | dose independent | rect. | 11 | 10 |
| 355 | 35.82 | humidity | 50 | 90 | > th | dose dependent | rect. | 5 | 15 |
| 357 | 35.83 | temperature | 25 | 30 | < th | dose independent | sin | 20 | NA |
| 359 | 35.83 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 21 |
| 381 | 35.85 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 384 | 35.86 | radiation | 1 | 720 | < th | dose dependent | sin | 15 | NA |
| 385 | 35.86 | temperature | 25 | 90 | < th | dose dependent | rect. | 10 | 11 |
| 389 | 35.87 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 397 | 35.89 | radiation | 1 | 270 | < th | dose independent | rect. | 17 | 1 |
| 398 | 35.89 | temperature | 25 | 10 | < th | dose independent | rect. | 16 | 5 |
| 419 | 35.91 | temperature | 25 | 10 | < th | dose independent | rect. | 12 | 9 |
| 425 | 35.91 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 433 | 35.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 482 | 35.97 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 18 |
| 491 | 35.98 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 21 |
| 503 | 35.99 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 562 | 36.04 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 8 |
| 586 | 36.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 683 | 36.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 686 | 36.12 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 711 | 36.14 | temperature | 25 | 10 | < th | dose independent | rect. | 14 | 7 |
| 742 | 36.15 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 23 |
| 826 | 36.19 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 23 |
| 893 | 36.21 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 13 |
| 907 | 36.22 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 922 | 36.23 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |