BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0427300 Os05g0427300|AK120426
(187 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G10110.1 | chr4:6309606-6310809 REVERSE LENGTH=174 155 9e-39
AT2G18510.1 | chr2:8031554-8033517 REVERSE LENGTH=364 84 4e-17
AT1G71800.1 | chr1:26999606-27001850 FORWARD LENGTH=462 52 1e-07
AT4G00830.1 | chr4:352782-354965 FORWARD LENGTH=496 52 1e-07
AT2G43370.1 | chr2:18013431-18015376 FORWARD LENGTH=334 52 2e-07
AT1G71770.1 | chr1:26990777-26993489 REVERSE LENGTH=683 52 2e-07
AT1G22760.1 | chr1:8055599-8058799 FORWARD LENGTH=661 51 4e-07
AT5G61030.1 | chr5:24560870-24562152 FORWARD LENGTH=310 50 5e-07
AT1G49760.1 | chr1:18416740-18419753 FORWARD LENGTH=672 50 1e-06
AT4G34110.1 | chr4:16336732-16339892 FORWARD LENGTH=630 49 1e-06
AT5G64200.1 | chr5:25681849-25683553 REVERSE LENGTH=304 49 1e-06
AT3G14100.1 | chr3:4673027-4675950 FORWARD LENGTH=428 48 2e-06
AT2G23350.1 | chr2:9943209-9946041 FORWARD LENGTH=663 48 3e-06
AT2G37220.1 | chr2:15634980-15636331 REVERSE LENGTH=290 47 7e-06
>AT4G10110.1 | chr4:6309606-6310809 REVERSE LENGTH=174
Length = 173
Score = 155 bits (393), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 89/182 (48%), Positives = 110/182 (60%), Gaps = 12/182 (6%)
Query: 1 MSRNPGCTVFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEI 60
MS CTV+IGN+DE+V +RVLY+I+IQ GRV+DLHIPRDKET++ KG+AFAEYETEEI
Sbjct: 1 MSGTSNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEI 60
Query: 61 AQYAVKLFSGLVRLHNRTLRFAISGQDKQSSNGXXXXXXXXXXXXXXXXAQLMRSSDTPA 120
A YAVKLFSGLV L+NRTL+FAISGQDK SN SD A
Sbjct: 61 ADYAVKLFSGLVSLYNRTLKFAISGQDKLQSNSANSGHRARPQSLA------FEHSDRAA 114
Query: 121 SQHT--VVNGRIAGISPNHSYSAHSEAPSGISSRGLSNGTYEYSRRVFGSVLNDVSRRTD 178
H + I+ SP P G+S + + EYSRRV GS L+ ++
Sbjct: 115 YHHLERFSSQLISPPSPLPLDYTQEPPPPGVS----NGASLEYSRRVLGSALDSINHSRP 170
Query: 179 RQ 180
R+
Sbjct: 171 RR 172
>AT2G18510.1 | chr2:8031554-8033517 REVERSE LENGTH=364
Length = 363
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
Query: 3 RNPGCTVFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEIAQ 62
RN TV++G LD ++ E +L+E+ +Q G VV++++P+D+ TN + Y F EY +EE A
Sbjct: 21 RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80
Query: 63 YAVKLFSGLVRLHNRTLRFAISGQDKQS 90
YA+K+ + +++LH + +R + QDK+S
Sbjct: 81 YAIKVLN-MIKLHGKPIRVNKASQDKKS 107
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 6 GCTVFIGNLDEKVPERVLYEILIQVGRVV-DLHIPRDKETNRSKGYAFAEYETEEIAQYA 64
G +FIGNLD V E++LY+ G + + I RD +T S+G+ F Y++ E + A
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
Query: 65 VKLFSGLVRLHNRTL 79
++ +G L NR +
Sbjct: 171 IESMTGQY-LSNRQI 184
>AT1G71800.1 | chr1:26999606-27001850 FORWARD LENGTH=462
Length = 461
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 9 VFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEIAQYAVKLF 68
VF+GN+ E L EI +VG VV + D+ET + KGY F EY+ EE A A +
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 69 SGLVRLHNRTLRFAISGQDK 88
++ R LR + DK
Sbjct: 71 QSY-EINGRQLRVDFAENDK 89
>AT4G00830.1 | chr4:352782-354965 FORWARD LENGTH=496
Length = 495
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 6 GCTVFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEIAQYAV 65
G VFIG L V E L ++ ++G + ++ + +D+++ SKGYAF ++T+++AQ A+
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 66 KLFSGLVRLHNRTLRFAIS 84
+ +T+R ++S
Sbjct: 175 EELHSK-EFKGKTIRCSLS 192
>AT2G43370.1 | chr2:18013431-18015376 FORWARD LENGTH=334
Length = 333
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 4 NPGCTVFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEE 59
+P CT+F+G L E L E++ + GR+ +L + R T S+GY F EYETE+
Sbjct: 61 DPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEK 116
>AT1G71770.1 | chr1:26990777-26993489 REVERSE LENGTH=683
Length = 682
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 9 VFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEIAQYAVKLF 68
VFI NLD + + LYE G ++ + D RSKGY F ++E EE AQ A+
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 69 SGLV 72
+G++
Sbjct: 207 NGML 210
>AT1G22760.1 | chr1:8055599-8058799 FORWARD LENGTH=661
Length = 660
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 9 VFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEIAQYAVKLF 68
+FI NLD + + L+E G ++ + D T RSKGY F ++E EE AQ A+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 69 SGLV 72
+G++
Sbjct: 197 NGML 200
>AT5G61030.1 | chr5:24560870-24562152 FORWARD LENGTH=310
Length = 309
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 9 VFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEIAQYAVKLF 68
+FIG + + E L E + G VVD + D+ET RS+G+ F + + E A A++
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 69 SGLVRLHNRTLR 80
G LH R ++
Sbjct: 102 DGR-DLHGRVVK 112
>AT1G49760.1 | chr1:18416740-18419753 FORWARD LENGTH=672
Length = 671
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 7 CTVFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEIAQYAVK 66
++++G+LD V + L+E Q G+VV + + RD T RS GY + Y T + A A+
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 67 LFSGLVRLHNRTLRFAISGQD 87
+ + L+ R +R S +D
Sbjct: 105 ELN-FMALNGRAIRVMYSVRD 124
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 9 VFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEIAQYAVKLF 68
+FI NLD+ + + L+E G ++ + D + +SKGY F +Y+T+E AQ A+
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 69 SGLV 72
+G++
Sbjct: 194 NGML 197
>AT4G34110.1 | chr4:16336732-16339892 FORWARD LENGTH=630
Length = 629
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 3 RNPGCTVFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEIAQ 62
R+ +FI NLDE + + L++ G +V + D + +SKGY F +Y EE AQ
Sbjct: 120 RSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQ 178
Query: 63 YAVKLFSGLV 72
A++ +G++
Sbjct: 179 KAIEKLNGML 188
>AT5G64200.1 | chr5:25681849-25683553 REVERSE LENGTH=304
Length = 303
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 23 LYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEIAQYAVKLFSGLV 72
LY + + G+VVD+ IPRD+ T S+G+AF Y+ ++ A AV+ G V
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRV 81
>AT3G14100.1 | chr3:4673027-4675950 FORWARD LENGTH=428
Length = 427
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 9 VFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEIAQYAVKLF 68
+F+G+L +V + LY+ D + D++T RS+G+ F + ++ AQ A+
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 69 SGLVRLHNRTLRF------AISGQDKQSSNG 93
+G L +R +R A SG DK SS+G
Sbjct: 206 NG-KWLSSRQIRCNWATKGATSGDDKLSSDG 235
>AT2G23350.1 | chr2:9943209-9946041 FORWARD LENGTH=663
Length = 662
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 7 CTVFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEIAQYAVK 66
C++++G+LD V + LY+ +V +VV + + RD TN S GY + Y + A+ A++
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
>AT2G37220.1 | chr2:15634980-15636331 REVERSE LENGTH=290
Length = 289
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 9 VFIGNLDEKVPERVLYEILIQVGRVVDLHIPRDKETNRSKGYAFAEYETEEIAQYAVKLF 68
V++GNL V + L + + G+VV+ + D+++ RSKG+ F Y++ + Q A+K
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 69 SGLVRLHNRTLR 80
G L R +R
Sbjct: 266 DG-ADLDGRQIR 276
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,641,299
Number of extensions: 134220
Number of successful extensions: 530
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 18
Length of query: 187
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 94
Effective length of database: 8,556,881
Effective search space: 804346814
Effective search space used: 804346814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)