BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0420500 Os05g0420500|AK070104
(711 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0420500 Conserved hypothetical protein 1447 0.0
Os01g0885300 Conserved hypothetical protein 311 1e-84
Os02g0558600 Conserved hypothetical protein 97 6e-20
>Os05g0420500 Conserved hypothetical protein
Length = 711
Score = 1447 bits (3745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 705/711 (99%), Positives = 705/711 (99%)
Query: 1 MATEVTQNYFAWSQEESPVQDSSQGTPQVFDHGSISFGRFELESLAWEKWSVFANDRRHE 60
MATEVTQNYFAWSQEESPVQDSSQGTPQVFDHGSISFGRFELESLAWEKWSVFANDRRHE
Sbjct: 1 MATEVTQNYFAWSQEESPVQDSSQGTPQVFDHGSISFGRFELESLAWEKWSVFANDRRHE 60
Query: 61 EFGKFNGLVAKKKAYFEEYFKRIRELKALXXXXXXTELNLDYSGDGSDSSQTGEDVPTAD 120
EFGKFNGLVAKKKAYFEEYFKRIRELKAL TELNLDYSGDGSDSSQTGEDVPTAD
Sbjct: 61 EFGKFNGLVAKKKAYFEEYFKRIRELKALQQQNQQTELNLDYSGDGSDSSQTGEDVPTAD 120
Query: 121 QASPSGSGTLLDSMVQTGVQTIFENDLECYDDNDKEMLDKDISPSVGGTCQIEQEFRESA 180
QASPSGSGTLLDSMVQTGVQTIFENDLECYDDNDKEMLDKDISPSVGGTCQIEQEFRESA
Sbjct: 121 QASPSGSGTLLDSMVQTGVQTIFENDLECYDDNDKEMLDKDISPSVGGTCQIEQEFRESA 180
Query: 181 SGGNHPDRMVDVLQQNTNCGPDDLGRPMESMMTPKRTVKKDSLVGQAAKTMPKTVNMTSS 240
SGGNHPDRMVDVLQQNTNCGPDDLGRPMESMMTPKRTVKKDSLVGQAAKTMPKTVNMTSS
Sbjct: 181 SGGNHPDRMVDVLQQNTNCGPDDLGRPMESMMTPKRTVKKDSLVGQAAKTMPKTVNMTSS 240
Query: 241 NIPGHAVVNKGTDSGKSSVVNRRAKPETIQQRLKAVTGNIVDIVGRSKLVVKEVPGIMGV 300
NIPGHAVVNKGTDSGKSSVVNRRAKPETIQQRLKAVTGNIVDIVGRSKLVVKEVPGIMGV
Sbjct: 241 NIPGHAVVNKGTDSGKSSVVNRRAKPETIQQRLKAVTGNIVDIVGRSKLVVKEVPGIMGV 300
Query: 301 RRPSSPALQRPSTRERRPVTRDSSRKAPEVATMCRPSTAERRPATRELAPKQANTVVPCR 360
RRPSSPALQRPSTRERRPVTRDSSRKAPEVATMCRPSTAERRPATRELAPKQANTVVPCR
Sbjct: 301 RRPSSPALQRPSTRERRPVTRDSSRKAPEVATMCRPSTAERRPATRELAPKQANTVVPCR 360
Query: 361 PSTPNRRPMTRELAPVHSSIATPRRPSTAERRPITRGMAPMHPSIATPVRPSTAERRPTS 420
PSTPNRRPMTRELAPVHSSIATPRRPSTAERRPITRGMAPMHPSIATPVRPSTAERRPTS
Sbjct: 361 PSTPNRRPMTRELAPVHSSIATPRRPSTAERRPITRGMAPMHPSIATPVRPSTAERRPTS 420
Query: 421 KQMAQKHVGMATPSRPSTAERRPITREAARKNADVAILHRPSTAERRPITRETPQKHANV 480
KQMAQKHVGMATPSRPSTAERRPITREAARKNADVAILHRPSTAERRPITRETPQKHANV
Sbjct: 421 KQMAQKHVGMATPSRPSTAERRPITREAARKNADVAILHRPSTAERRPITRETPQKHANV 480
Query: 481 VALHRPSTAERRPVVREIAPKHADVTLTPARRPSTSERRPVTRETALRHSNFTGSCWPLT 540
VALHRPSTAERRPVVREIAPKHADVTLTPARRPSTSERRPVTRETALRHSNFTGSCWPLT
Sbjct: 481 VALHRPSTAERRPVVREIAPKHADVTLTPARRPSTSERRPVTRETALRHSNFTGSCWPLT 540
Query: 541 PQRHISRGSAQIHADVSTTPRHPSTGERRPITKESNIKLDEKTPIKLRGMLANPKGAMAT 600
PQRHISRGSAQIHADVSTTPRHPSTGERRPITKESNIKLDEKTPIKLRGMLANPKGAMAT
Sbjct: 541 PQRHISRGSAQIHADVSTTPRHPSTGERRPITKESNIKLDEKTPIKLRGMLANPKGAMAT 600
Query: 601 VVTPQKAITQKLVKSSKPEMKSCAKERTELQAVGKHKASSVNLPPREMFTSNVRANRVPE 660
VVTPQKAITQKLVKSSKPEMKSCAKERTELQAVGKHKASSVNLPPREMFTSNVRANRVPE
Sbjct: 601 VVTPQKAITQKLVKSSKPEMKSCAKERTELQAVGKHKASSVNLPPREMFTSNVRANRVPE 660
Query: 661 SFRKPNKVTCPSLFFVPCCLSKLHSLSTVVTYAVLAPLAIFIAVWRLLQLD 711
SFRKPNKVTCPSLFFVPCCLSKLHSLSTVVTYAVLAPLAIFIAVWRLLQLD
Sbjct: 661 SFRKPNKVTCPSLFFVPCCLSKLHSLSTVVTYAVLAPLAIFIAVWRLLQLD 711
>Os01g0885300 Conserved hypothetical protein
Length = 573
Score = 311 bits (797), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 193/409 (47%), Positives = 248/409 (60%), Gaps = 26/409 (6%)
Query: 1 MATEVTQNYFAWSQEESPVQDSSQGTP--QVFDHGSISFGRFELESLAWEKWSVFANDRR 58
MA EV Q +FAWSQ E +D SQG Q DHGSISFGRFELESL+WEKWSVF++D+R
Sbjct: 2 MAAEVNQTFFAWSQGEPTERDGSQGVSVSQKIDHGSISFGRFELESLSWEKWSVFSDDKR 61
Query: 59 HEEFGKFNGLVAKKKAYFEEYFKRIRELKALXXXXXXTELNLDYSGDGSDSSQTGEDVPT 118
HEEFGKFNGLVA+KKAYFEEY+++IRELKA TEL L+YSGDGSDSSQTGE
Sbjct: 62 HEEFGKFNGLVAQKKAYFEEYYRKIRELKA-QQQNQQTELILEYSGDGSDSSQTGEYTQG 120
Query: 119 ADQASPSGSGTLLDSMVQTGV-QTIFENDLECYDDNDKEMLDKDISPSVG-----GTCQI 172
A+ +P+GSGT++D V+ G +T E L CYDD++ E + + S S G Q
Sbjct: 121 AELETPTGSGTIVDDYVEQGAHETTSEQGLTCYDDHENENFNAEFSSSNISSSAVGLQQT 180
Query: 173 EQEFRESASGGNHPDRMVDVLQQNTNCGPDDLGRPMESMMTPKRTVKKDSLVGQAAKTMP 232
++ RE+ G + +M D+ QQN G LG E + PKR ++KDS + A K +P
Sbjct: 181 GRDARENVHGDDSAGKM-DLEQQNAISG-HSLGTAYEVVRAPKRIIEKDSRLRYAPKIVP 238
Query: 233 KTVNMTSSNIPGHAVVNKGTDSGKSSV-VNRRAKPETIQQRL----KAVTGNIVDIVGRS 287
K+V +S + V+K DS K + +N++AK T RL + R+
Sbjct: 239 KSVKTSSDSPLDRTSVSKRPDSLKLGMSINQKAK--TDNDRLLRGPNVAPHKMSGSTERN 296
Query: 288 KLVVKEVPGIMGVRRPSSPALQRPSTRERRPVTRDSSRKAPEVATMCRPSTAERRPATRE 347
KL K+ GVRRPSS + QRPS ER + R+S +K +V+T RPSTAER P T E
Sbjct: 297 KLTTKQT----GVRRPSSASSQRPSVGERHRIARESIKKPADVSTPRRPSTAERHPVTTE 352
Query: 348 LAPKQANTVVPCRPSTPNRRPMTRELAPVHSSIATPRRPSTAERRPITR 396
A KQA+ P RPST RR + + A + T RPST ERR +TR
Sbjct: 353 RARKQADVDTPRRPSTSERRAVNKGSA----DMTTTHRPSTGERRSVTR 397
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 125/246 (50%), Gaps = 47/246 (19%)
Query: 437 STAERRPITREAARKNADVAILHRPSTAERRPITRETPQKHANVVALHRPSTAERRPVVR 496
ST + T++ + A RPS ER I RE+ +K A+V RPSTAER PV
Sbjct: 292 STERNKLTTKQTGVRRPSSASSQRPSVGERHRIARESIKKPADVSTPRRPSTAERHPVTT 351
Query: 497 EIAPKHADVTLTPARRPSTSERRPVTRETALRHSNFTGSCWPLTPQRHISRGSAQIHADV 556
E A K ADV TP RRPSTSERR V ++GSA D+
Sbjct: 352 ERARKQADVD-TP-RRPSTSERRAV------------------------NKGSA----DM 381
Query: 557 STTPRHPSTGERRPITKESNIKLDEKTPIKLRGMLANPKGAMATVVTPQKAITQKLVKS- 615
+TT R PSTGERR +T+ES +K+D +TP K R + KGA TV +KA T KS
Sbjct: 382 TTTHR-PSTGERRSVTRESVLKMDVRTPSKTRPTMTQLKGATTTVGIVKKAGTPNASKSI 440
Query: 616 --------------SKPEMKSCAKERTELQAVGKHKASSVNLPPREMFTSNVRANRVPES 661
SK S + T+LQ GK K+SSV+LPPR++ +S++ ++
Sbjct: 441 NMGTKSNIRELEGPSKVGRHSVGSKITDLQIAGKQKSSSVHLPPRKLLSSSI-GEPALQT 499
Query: 662 FRKPNK 667
F +P K
Sbjct: 500 FTRPKK 505
>Os02g0558600 Conserved hypothetical protein
Length = 593
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 60/96 (62%), Gaps = 8/96 (8%)
Query: 1 MATEVTQNYFA-WSQEESPVQDSSQGTP-----QVFDHGSISFGRFELESLAWEKWSVFA 54
MA EV Q + + WS + P D T V DHGS+SFGRF ESL+WEK SVF
Sbjct: 1 MAAEVGQRFCSGWSYSDVPYNDHHAQTDASVQQMVLDHGSVSFGRFAAESLSWEKRSVFD 60
Query: 55 NDRRHEEFGKFN--GLVAKKKAYFEEYFKRIRELKA 88
++RR EE GLVA+KKA+FEEY+KR R LKA
Sbjct: 61 HNRRQEELSNLTMPGLVAQKKAFFEEYYKRARLLKA 96
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.127 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,541,802
Number of extensions: 1189782
Number of successful extensions: 4198
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 4097
Number of HSP's successfully gapped: 5
Length of query: 711
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 603
Effective length of database: 11,396,689
Effective search space: 6872203467
Effective search space used: 6872203467
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 160 (66.2 bits)