Os01g0885300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0885300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 642.87 | 1.19 | 7.56 | -7.73 | 1.88 | 3.73 | 1.68 | -6.77 | -0.954 | 1.04 | 25.94 | 1268 | -- | -- |
| 654.35 | 1.19 | 7.44 | -6.2 | 1.85 | 3.32 | 1.43 | -- | -0.969 | 0.881 | 23.59 | 1255 | -- | -- |
| 653.98 | 1.19 | 7.55 | -7.71 | 1.89 | 3.73 | -- | -6.54 | -0.897 | 0.912 | 26.17 | 1276 | -- | -- |
| 663.18 | 1.2 | 7.43 | -6.2 | 1.82 | 3.34 | -- | -- | -0.916 | 0.802 | 23.88 | 1251 | -- | -- |
| 814.5 | 1.33 | 7.6 | -7.84 | -- | 4.71 | -- | -6.25 | -1.35 | -- | 24.1 | 1110 | -- | -- |
| 1023.53 | 1.5 | 7.31 | -5.04 | 2.39 | -- | 2.13 | -- | -0.365 | 1.12 | -- | -- | -- | -- |
| 1042.1 | 1.51 | 7.32 | -5.12 | 2.39 | -- | -- | -- | -0.375 | 0.999 | -- | -- | -- | -- |
| 822.43 | 1.34 | 7.42 | -6.29 | -- | 4.18 | -- | -- | -0.965 | -- | 23.84 | 1101 | -- | -- |
| 1557.04 | 1.84 | 7.09 | -- | 2.05 | 1.88 | -- | -- | 0.633 | 0.896 | 31.42 | 1286 | -- | -- |
| 1397.06 | 1.75 | 7.28 | -5.03 | -- | -- | -- | -- | -0.329 | -- | -- | -- | -- | -- |
| 1732.1 | 1.95 | 7.19 | -- | 2.31 | -- | -- | -- | 0.195 | 0.906 | -- | -- | -- | -- |
| 1791.66 | 1.97 | 7.2 | -- | -- | 2.82 | -- | -- | -0.022 | -- | 24.63 | 1066 | -- | -- |
| 2063.64 | 2.12 | 7.15 | -- | -- | -- | -- | -- | 0.229 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 648.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 2 | 652.40 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 20 |
| 3 | 652.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 32 | 655.97 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 39 | 656.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 42 | 656.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 117 | 658.20 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 125 | 658.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 265 | 662.97 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 394 | 671.58 | temperature | 30 | 1440 | > th | dose independent | sin | 16 | NA |
| 403 | 671.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 406 | 672.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 410 | 672.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 412 | 672.05 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 416 | 672.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 420 | 672.18 | temperature | 30 | 1440 | < th | dose independent | sin | 17 | NA |
| 421 | 672.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 431 | 672.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 461 | 673.05 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 487 | 673.30 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 542 | 673.79 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 577 | 674.35 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 578 | 674.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 582 | 674.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 584 | 674.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 587 | 674.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 591 | 674.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 601 | 674.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 603 | 674.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 606 | 674.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 612 | 674.55 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 628 | 674.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 634 | 674.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 643 | 674.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 655 | 674.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 657 | 674.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 696 | 674.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 758 | 676.10 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 888 | 676.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 993 | 678.50 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |