BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0885300 Os01g0885300|AK102068
(573 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G24160.1 | chr1:8553669-8555830 REVERSE LENGTH=541 77 3e-14
AT1G70100.3 | chr1:26403736-26405832 FORWARD LENGTH=505 70 3e-12
AT1G70950.1 | chr1:26752779-26755242 FORWARD LENGTH=479 60 4e-09
AT3G27350.2 | chr3:10126238-10127896 FORWARD LENGTH=320 60 4e-09
AT3G26050.1 | chr3:9521907-9524241 FORWARD LENGTH=534 59 6e-09
AT5G40700.2 | chr5:16292047-16293443 REVERSE LENGTH=304 58 2e-08
AT1G23060.1 | chr1:8170946-8172739 REVERSE LENGTH=368 57 4e-08
AT3G01710.1 | chr3:259952-261738 REVERSE LENGTH=392 52 7e-07
>AT1G24160.1 | chr1:8553669-8555830 REVERSE LENGTH=541
Length = 540
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 67/121 (55%), Gaps = 15/121 (12%)
Query: 37 SISFGRFELESLSWEKWSVFSDDKRHEEFGKFN--GLVAQKKAYFEEYYRKIRELKAQQQ 94
S+SFGRFE +SLSWEK+S FS +K EE GK G VAQKKAYFE +Y+KI E KA+
Sbjct: 38 SVSFGRFENDSLSWEKFSAFSPNKYLEEVGKCATPGSVAQKKAYFEAHYKKIAERKAEII 97
Query: 95 NQQTELILEYSGDGSDSSQTGEYTQGAELETPTGSGTIVDDYVEQGAHETTSEQGLTCYD 154
+Q+ + S S Q + E E G +V+ V+ G + L+C +
Sbjct: 98 DQEKLMDENASFRSIVSDQ-----ESVECE---NGGVVVESEVDNGCN-----GQLSCDE 144
Query: 155 D 155
D
Sbjct: 145 D 145
>AT1G70100.3 | chr1:26403736-26405832 FORWARD LENGTH=505
Length = 504
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
Query: 37 SISFGRFELESLSWEKWSVFSDDKRHEEFGKF--NGLVAQKKAYFEEYYRKIRELKAQQQ 94
S+SFG+FE +SLSWEK+S FS +K EE K G VAQKKAYFE +Y+KI E +A
Sbjct: 28 SVSFGKFENDSLSWEKFSSFSPNKYLEEVEKCATAGSVAQKKAYFESHYKKIAERRADII 87
Query: 95 NQQTELI 101
+Q +L+
Sbjct: 88 MEQEKLL 94
>AT1G70950.1 | chr1:26752779-26755242 FORWARD LENGTH=479
Length = 478
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 23/146 (15%)
Query: 33 IDHGSISFGRFELESLSWEKWSVFSDDKRHEEFGKFN--GLVAQKKAYFEEYYRK--IR- 87
I GSISFGRFE E LSWEK S FS ++ EE K + G V + KA+FE +++K IR
Sbjct: 18 IHSGSISFGRFEKEGLSWEKRSSFSHNRYLEEVDKCSKPGSVTEMKAHFEAHFKKKGIRF 77
Query: 88 --ELKAQ-------------QQNQQTELILEYSGDGS---DSSQTGEYTQGAELETPTGS 129
L++Q + TE +Y DGS D+SQ+ + + G
Sbjct: 78 PASLESQTWGVHQTSNEPDDEAVHATESFEDYRSDGSFSEDTSQSNSVCNYSHEQEKCGQ 137
Query: 130 GTIVDDYVEQGAHETTSEQGLTCYDD 155
G ++ E+ H + ++ L D+
Sbjct: 138 GKSQCEFDEESDHCVSYDEILVNSDE 163
>AT3G27350.2 | chr3:10126238-10127896 FORWARD LENGTH=320
Length = 319
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 26/144 (18%)
Query: 12 AWSQGEPTERDGSQGVSVSQKIDHGSISFGRFELESLSWEKWSVFSDDKRHEEFGKFN-- 69
++S P R+ S + + SISFG+F E+L W KWS FS K EE K++
Sbjct: 10 SYSFAAPITRNDSHEENTIHALSQ-SISFGKFMTENLEWGKWSSFSHKKYVEEAEKYSRP 68
Query: 70 GLVAQKKAYFEEYYRKIRE---------------------LKAQQQNQQTELILEYSGDG 108
G VAQKKA+FE +Y++I E L+ Q L+L+Y +G
Sbjct: 69 GSVAQKKAFFEAHYKRIAEAKKAATEEQPSVTPAEVLLHTLETQPPPPPPPLVLKYGEEG 128
Query: 109 SD--SSQTGEYTQGAELETPTGSG 130
+ S Q ++ ELE G
Sbjct: 129 RERNSFQIDDHDVTDELENVMFGG 152
>AT3G26050.1 | chr3:9521907-9524241 FORWARD LENGTH=534
Length = 533
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 29 VSQKIDHGSISFGRFELESLSWEKWSVFSDDKRHEEFGKFN--GLVAQKKAYFEEYYRKI 86
V ++ S+SFGR+ E+L+W +WS F+ ++ EE +F G VA+KKA+FE +++
Sbjct: 26 VPNRVLTESVSFGRYANETLAWARWSAFTQNRYLEEVERFTKPGSVAEKKAFFEAHFKNR 85
Query: 87 RELKAQQQNQQTELI 101
KA Q ++ E +
Sbjct: 86 ASGKAATQTKKIEQV 100
>AT5G40700.2 | chr5:16292047-16293443 REVERSE LENGTH=304
Length = 303
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 4 AEVNQTFFAWSQGEPTERDGSQGVSVSQKIDHGSISFGRFELESLSWEKWSVFSDDKRHE 63
AE F ++S P R+ S + + S+SFGRF E+L W KWS FS K +
Sbjct: 2 AESAVLFHSYSFAAPPSRNESHEDNTMHALSQ-SVSFGRFMTENLEWGKWSSFSHKKYVD 60
Query: 64 EFGKFN--GLVAQKKAYFEEYY 83
E KF+ G VAQKKA+FE +Y
Sbjct: 61 EAEKFSQPGSVAQKKAFFEAHY 82
>AT1G23060.1 | chr1:8170946-8172739 REVERSE LENGTH=368
Length = 367
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 33 IDHGSISFGRFELESLSWEKWSVFSDDKRHEEFGKFN--GLVAQKKAYFEEYYRK 85
I GS+SFGRFE ESLSWE+ S FS + EE +F+ G V Q +A+FE +++K
Sbjct: 18 IHSGSVSFGRFEKESLSWERRSSFSRNIYLEEAERFSKPGSVTQMRAHFEAHFKK 72
>AT3G01710.1 | chr3:259952-261738 REVERSE LENGTH=392
Length = 391
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 37 SISFGRFELESLSWEKWSVFSDDKRH----EEFGKFNGLVAQKKAYFEEYY 83
S+SFGRF E L WEKWS FS + E + K G VAQKKA+FE +Y
Sbjct: 27 SVSFGRFMSEKLDWEKWSAFSTQNPYVAEAERYSK-PGSVAQKKAFFEAHY 76
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.308 0.124 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,897,904
Number of extensions: 430915
Number of successful extensions: 1176
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1169
Number of HSP's successfully gapped: 8
Length of query: 573
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 469
Effective length of database: 8,255,305
Effective search space: 3871738045
Effective search space used: 3871738045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 114 (48.5 bits)