BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0885300 Os01g0885300|AK102068
         (573 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0885300  Conserved hypothetical protein                     1050   0.0  
Os05g0420500  Conserved hypothetical protein                      297   1e-80
Os02g0558600  Conserved hypothetical protein                      105   9e-23

>Os01g0885300 Conserved hypothetical protein
          Length = 573

 Score = 1050 bits (2714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/573 (90%), Positives = 520/573 (90%)

Query: 1   MMAAEVNQTFFAWSQGEPTERDGSQGVSVSQKIDHGSISFGRFELESLSWEKWSVFSDDK 60
           MMAAEVNQTFFAWSQGEPTERDGSQGVSVSQKIDHGSISFGRFELESLSWEKWSVFSDDK
Sbjct: 1   MMAAEVNQTFFAWSQGEPTERDGSQGVSVSQKIDHGSISFGRFELESLSWEKWSVFSDDK 60

Query: 61  RHEEFGKFNGLVAQKKAYFEEYYRKIRELKAQQQNQQTELILEYSGDGSDSSQTGEYTQG 120
           RHEEFGKFNGLVAQKKAYFEEYYRKIRELKAQQQNQQTELILEYSGDGSDSSQTGEYTQG
Sbjct: 61  RHEEFGKFNGLVAQKKAYFEEYYRKIRELKAQQQNQQTELILEYSGDGSDSSQTGEYTQG 120

Query: 121 AELETPTGSGTIVDDYVEQGAHETTSEQGLTCYDDHXXXXXXXXXXXXXXXXXXVGLQQT 180
           AELETPTGSGTIVDDYVEQGAHETTSEQGLTCYDDH                  VGLQQT
Sbjct: 121 AELETPTGSGTIVDDYVEQGAHETTSEQGLTCYDDHENENFNAEFSSSNISSSAVGLQQT 180

Query: 181 GRDARENVHGDDSAGKMDLEQQNAISGHSLGTAYEVVRAPKRIIEKDSRLRYAPKIVPKS 240
           GRDARENVHGDDSAGKMDLEQQNAISGHSLGTAYEVVRAPKRIIEKDSRLRYAPKIVPKS
Sbjct: 181 GRDARENVHGDDSAGKMDLEQQNAISGHSLGTAYEVVRAPKRIIEKDSRLRYAPKIVPKS 240

Query: 241 VKTSSDSPLDRTSVSKRPDSLKLGMSINQKAKTDNDRLLRGPNVAPHKMSGSTERNKLTT 300
           VKTSSDSPLDRTSVSKRPDSLKLGMSINQKAKTDNDRLLRGPNVAPHKMSGSTERNKLTT
Sbjct: 241 VKTSSDSPLDRTSVSKRPDSLKLGMSINQKAKTDNDRLLRGPNVAPHKMSGSTERNKLTT 300

Query: 301 KQTGVXXXXXXXXXXXXVGERHRIARESIKKPADVSTPRRPSTAERHPVTTERARKQADV 360
           KQTGV            VGERHRIARESIKKPADVSTPRRPSTAERHPVTTERARKQADV
Sbjct: 301 KQTGVRRPSSASSQRPSVGERHRIARESIKKPADVSTPRRPSTAERHPVTTERARKQADV 360

Query: 361 DTPRRPSTSERRAVNKGSADMTTTHRPSTGERRSVTRESVLKMDVRTPSKTRPTMTQLKG 420
           DTPRRPSTSERRAVNKGSADMTTTHRPSTGERRSVTRESVLKMDVRTPSKTRPTMTQLKG
Sbjct: 361 DTPRRPSTSERRAVNKGSADMTTTHRPSTGERRSVTRESVLKMDVRTPSKTRPTMTQLKG 420

Query: 421 ATTTVGIVKKAGTPNASKSINMGTKSNIRELEGPSKVGRHSVGSKITDLQIAGKQKSSSV 480
           ATTTVGIVKKAGTPNASKSINMGTKSNIRELEGPSKVGRHSVGSKITDLQIAGKQKSSSV
Sbjct: 421 ATTTVGIVKKAGTPNASKSINMGTKSNIRELEGPSKVGRHSVGSKITDLQIAGKQKSSSV 480

Query: 481 HLPPRKLLSSSIGEPALQTFTRPKKKDVAAQSRASTSKRAMTLHTGNVKGXXXXXXXXXX 540
           HLPPRKLLSSSIGEPALQTFTRPKKKDVAAQSRASTSKRAMTLHTGNVKG          
Sbjct: 481 HLPPRKLLSSSIGEPALQTFTRPKKKDVAAQSRASTSKRAMTLHTGNVKGRSSNPPPPPP 540

Query: 541 XXXXXXXXXXXXXGSNSSTVGQKPKVSSAPKWH 573
                        GSNSSTVGQKPKVSSAPKWH
Sbjct: 541 PPRRPSRTTNRPNGSNSSTVGQKPKVSSAPKWH 573



>Os05g0420500 Conserved hypothetical protein
          Length = 711

 Score =  297 bits (761), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 187/409 (45%), Positives = 238/409 (58%), Gaps = 26/409 (6%)

Query: 2   MAAEVNQTFFAWSQGEPTERDGSQGVSVSQKIDHGSISFGRFELESLSWEKWSVFSDDKR 61
           MA EV Q +FAWSQ E   +D SQG    Q  DHGSISFGRFELESL+WEKWSVF++D+R
Sbjct: 1   MATEVTQNYFAWSQEESPVQDSSQGTP--QVFDHGSISFGRFELESLAWEKWSVFANDRR 58

Query: 62  HEEFGKFNGLVAQKKAYFEEYYRKIRELKA-QQQNQQTELILEYSGDGSDSSQTGEYTQG 120
           HEEFGKFNGLVA+KKAYFEEY+++IRELKA QQQNQQTEL L+YSGDGSDSSQTGE    
Sbjct: 59  HEEFGKFNGLVAKKKAYFEEYFKRIRELKALQQQNQQTELNLDYSGDGSDSSQTGEDVPT 118

Query: 121 AELETPTGSGTIVDDYVEQGAHETTSEQGLTCYDDHXXXXXXXXXXXXXXXXXXVGLQQT 180
           A+  +P+GSGT++D  V+ G  +T  E  L CYDD+                   G  Q 
Sbjct: 119 ADQASPSGSGTLLDSMVQTGV-QTIFENDLECYDDNDKEMLDKDISPSVG-----GTCQI 172

Query: 181 GRDARENVHGDDSAGKM-DLEQQNAISG-HSLGTAYEVVRAPKRIIEKDSRLRYAPKIVP 238
            ++ RE+  G +   +M D+ QQN   G   LG   E +  PKR ++KDS +  A K +P
Sbjct: 173 EQEFRESASGGNHPDRMVDVLQQNTNCGPDDLGRPMESMMTPKRTVKKDSLVGQAAKTMP 232

Query: 239 KSVKTSSDSPLDRTSVSKRPDSLKLGMSINQKAK--TDNDRLLRGPNVAPHKMSGSTERN 296
           K+V  +S +      V+K  DS K  + +N++AK  T   RL          +     R+
Sbjct: 233 KTVNMTSSNIPGHAVVNKGTDSGKSSV-VNRRAKPETIQQRL----KAVTGNIVDIVGRS 287

Query: 297 KLTTKQT----GVXXXXXXXXXXXXVGERHRIARESIKKPADVSTPRRPSTAERHPVTTE 352
           KL  K+     GV              ER  + R+S +K  +V+T  RPSTAER P T E
Sbjct: 288 KLVVKEVPGIMGVRRPSSPALQRPSTRERRPVTRDSSRKAPEVATMCRPSTAERRPATRE 347

Query: 353 RARKQADVDTPRRPSTSERRAVNKGSA----DMTTTHRPSTGERRSVTR 397
            A KQA+   P RPST  RR + +  A     + T  RPST ERR +TR
Sbjct: 348 LAPKQANTVVPCRPSTPNRRPMTRELAPVHSSIATPRRPSTAERRPITR 396




 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/219 (40%), Positives = 114/219 (52%), Gaps = 47/219 (21%)

Query: 319 GERHRIARESIKKPADVSTPRRPSTAERHPVTTERARKQADVD-TP-RRPSTSERRAV-- 374
            ER  I RE+ +K A+V    RPSTAER PV  E A K ADV  TP RRPSTSERR V  
Sbjct: 464 AERRPITRETPQKHANVVALHRPSTAERRPVVREIAPKHADVTLTPARRPSTSERRPVTR 523

Query: 375 ----------------------NKGSA----DMTTTHR-PSTGERRSVTRESVLKMDVRT 407
                                 ++GSA    D++TT R PSTGERR +T+ES +K+D +T
Sbjct: 524 ETALRHSNFTGSCWPLTPQRHISRGSAQIHADVSTTPRHPSTGERRPITKESNIKLDEKT 583

Query: 408 PSKTRPTMTQLKGATTTVGIVKKAGTPNASKSINMGTKSNIRELEGPSKVGRHSVGSKIT 467
           P K R  +   KGA  TV   +KA T    KS               SK    S   + T
Sbjct: 584 PIKLRGMLANPKGAMATVVTPQKAITQKLVKS---------------SKPEMKSCAKERT 628

Query: 468 DLQIAGKQKSSSVHLPPRKLLSSSI-GEPALQTFTRPKK 505
           +LQ  GK K+SSV+LPPR++ +S++      ++F +P K
Sbjct: 629 ELQAVGKHKASSVNLPPREMFTSNVRANRVPESFRKPNK 667



>Os02g0558600 Conserved hypothetical protein
          Length = 593

 Score =  105 bits (262), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 72/117 (61%), Gaps = 6/117 (5%)

Query: 2   MAAEVNQTFFA-WSQGEPTERD--GSQGVSVSQKI-DHGSISFGRFELESLSWEKWSVFS 57
           MAAEV Q F + WS  +    D       SV Q + DHGS+SFGRF  ESLSWEK SVF 
Sbjct: 1   MAAEVGQRFCSGWSYSDVPYNDHHAQTDASVQQMVLDHGSVSFGRFAAESLSWEKRSVFD 60

Query: 58  DDKRHEEFGKFN--GLVAQKKAYFEEYYRKIRELKAQQQNQQTELILEYSGDGSDSS 112
            ++R EE       GLVAQKKA+FEEYY++ R LKAQ++  QTE   E   D  D++
Sbjct: 61  HNRRQEELSNLTMPGLVAQKKAFFEEYYKRARLLKAQEEVNQTEATSEEGTDHYDAN 117



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.124    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,476,413
Number of extensions: 699773
Number of successful extensions: 2003
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1964
Number of HSP's successfully gapped: 4
Length of query: 573
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 467
Effective length of database: 11,501,117
Effective search space: 5371021639
Effective search space used: 5371021639
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 159 (65.9 bits)