BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0419200 Os05g0419200|AK071273
(415 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0419200 Protein of unknown function DUF647 family protein 860 0.0
Os04g0517300 Protein of unknown function DUF647 family protein 153 2e-37
Os01g0141600 Protein of unknown function DUF647 family protein 99 7e-21
>Os05g0419200 Protein of unknown function DUF647 family protein
Length = 415
Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/415 (100%), Positives = 415/415 (100%)
Query: 1 MGVTFKAVPLQSPLPPVEEIMSFIRSYVVPEGFPDSVTPSYVPYMTWRALKHFFGGAMGV 60
MGVTFKAVPLQSPLPPVEEIMSFIRSYVVPEGFPDSVTPSYVPYMTWRALKHFFGGAMGV
Sbjct: 1 MGVTFKAVPLQSPLPPVEEIMSFIRSYVVPEGFPDSVTPSYVPYMTWRALKHFFGGAMGV 60
Query: 61 FTTRTLLNSVGVAQSRATSGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFSGDL 120
FTTRTLLNSVGVAQSRATSGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFSGDL
Sbjct: 61 FTTRTLLNSVGVAQSRATSGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFSGDL 120
Query: 121 LMELGAGIELATAAFPQLFLPMACIANVVKNVAAVTSTSTRTPIYKAYAKGENIGDVTAK 180
LMELGAGIELATAAFPQLFLPMACIANVVKNVAAVTSTSTRTPIYKAYAKGENIGDVTAK
Sbjct: 121 LMELGAGIELATAAFPQLFLPMACIANVVKNVAAVTSTSTRTPIYKAYAKGENIGDVTAK 180
Query: 181 GESVGNIADLLGTGLSILISKRNPSLVTSFAFLSCGYLLSSYHEVRSVVLNTLNTARFTV 240
GESVGNIADLLGTGLSILISKRNPSLVTSFAFLSCGYLLSSYHEVRSVVLNTLNTARFTV
Sbjct: 181 GESVGNIADLLGTGLSILISKRNPSLVTSFAFLSCGYLLSSYHEVRSVVLNTLNTARFTV 240
Query: 241 AVDSFIKSGHVPSLKEGNSQETIFNPPWRHQPVAIGSRFGEAFQEPASFVAIRPLFEDER 300
AVDSFIKSGHVPSLKEGNSQETIFNPPWRHQPVAIGSRFGEAFQEPASFVAIRPLFEDER
Sbjct: 241 AVDSFIKSGHVPSLKEGNSQETIFNPPWRHQPVAIGSRFGEAFQEPASFVAIRPLFEDER 300
Query: 301 YIVTYNPTKDKVYALLKDQAKPDDILKAAFHAHVLLHFINASHANLNARKRMNSNRSYQN 360
YIVTYNPTKDKVYALLKDQAKPDDILKAAFHAHVLLHFINASHANLNARKRMNSNRSYQN
Sbjct: 301 YIVTYNPTKDKVYALLKDQAKPDDILKAAFHAHVLLHFINASHANLNARKRMNSNRSYQN 360
Query: 361 ANPLNMDFIPHIAESCKIVTSSYGVFKKKAREQGWIMSESLLNPGRARLCGIVPQ 415
ANPLNMDFIPHIAESCKIVTSSYGVFKKKAREQGWIMSESLLNPGRARLCGIVPQ
Sbjct: 361 ANPLNMDFIPHIAESCKIVTSSYGVFKKKAREQGWIMSESLLNPGRARLCGIVPQ 415
>Os04g0517300 Protein of unknown function DUF647 family protein
Length = 438
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/355 (31%), Positives = 182/355 (51%), Gaps = 24/355 (6%)
Query: 16 PVEEIM--SFIRSYVVPEGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTRTLLNSVGVA 73
P+ + M SF+ + P G+P SV Y+ Y +RAL+HF + V +T++LL + G+
Sbjct: 54 PIHDKMIDSFLNKFF-PSGYPYSVNEGYLTYTKFRALQHFSSAMLHVLSTQSLLFAAGLR 112
Query: 74 QSRATSGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFSGDLLMELGAGIELATA 133
+ A A A++WILKDG GK++ + G + D + K R D+L + G +E+ +
Sbjct: 113 PTPAQ--ATAVSWILKDGMQHAGKLICSGMGARMDSEPKSWRILADVLYDFGTALEVISP 170
Query: 134 AFPQLFLPMACIANVVKNVAAVTSTSTRTPIYKAYAKGENIGDVTAKGESVGNIADLLGT 193
PQLFL +A N K +A V + +TR PIY ++AK N+ D+ AKGE++ + +++G
Sbjct: 171 LCPQLFLEVAGFGNFAKGMAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVMGI 230
Query: 194 GLSILISKRNPSLVTSFAFLSCGYLLSSYH------EVRSVVLNTLNTARFTVAVDSFIK 247
G I ++ S T+ L G LLS H E+R+ +NTLN R + V FIK
Sbjct: 231 GAGIGLASTVCS--TTQGKLIAGPLLSVVHIYGVVQEMRATPVNTLNPQRTAMIVADFIK 288
Query: 248 SGHVPSLKEGNSQETIFNPPWRHQPVAIGSRFGEAFQE---PASFVAIRPLFEDERYIVT 304
SG V S E +E + P R A + G+ + P ++ F E+++++
Sbjct: 289 SGKVSSPAELRYREDLLFPN-RLIEEAGSVKIGQPVRRVLSPQRIEQLKATFSKEKFLLS 347
Query: 305 YNPTKDKVYALLKDQAKPDDILK----AAFHAHVLLHFINASHANLN-ARKRMNS 354
+ Y +L+ A +D L+ AAF + + + + LN A +RM +
Sbjct: 348 RK--DNSAYMVLEQSATGEDALRGWLVAAFASEMERSGVGSGDTVLNVAYERMEN 400
>Os01g0141600 Protein of unknown function DUF647 family protein
Length = 323
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 90/180 (50%), Gaps = 4/180 (2%)
Query: 24 IRSYVVPEGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTRTLLNSVGVAQSRATSGAVA 83
I+ +V+P GFP SV+ Y+ YM W+ + G T TLL +VGV TS A +
Sbjct: 103 IKDFVLPAGFPGSVSDDYLEYMLWQLPTNVTGWICHTLVTSTLLKAVGVGSFTGTSAAAS 162
Query: 84 ---INWILKDGAGRVGKMLFA-RQGKKFDYDLKQLRFSGDLLMELGAGIELATAAFPQLF 139
I W+ KDG G G++L R G FD D K+ R D + G+ EL T +P F
Sbjct: 163 AAAIRWVSKDGIGAFGRLLIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITPLYPGYF 222
Query: 140 LPMACIANVVKNVAAVTSTSTRTPIYKAYAKGENIGDVTAKGESVGNIADLLGTGLSILI 199
LP+A + N+ K V + I +A+ N+G+V AK E A LLG + + I
Sbjct: 223 LPLASLGNLAKAVGRGFRDPSFRVIQNHFAESGNLGEVAAKEEVWEVGAQLLGLSIGVFI 282
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,757,501
Number of extensions: 569238
Number of successful extensions: 1114
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1111
Number of HSP's successfully gapped: 3
Length of query: 415
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 312
Effective length of database: 11,657,759
Effective search space: 3637220808
Effective search space used: 3637220808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)