Os05g0419200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF647 family protein.
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Os05g0419200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF647 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.96 | 0.332 | 13.8 | -1.32 | 2.82 | 1.01 | -0.528 | -0.425 | -0.569 | 8.15 | 9.205e-05 | 139 | -- | -- |
| 50.59 | 0.331 | 13.8 | -1.31 | 2.81 | 1 | -0.23 | -- | -0.556 | 8.13 | 0.009987 | 150 | -- | -- |
| 50.34 | 0.33 | 13.8 | -1.34 | 2.78 | 1.02 | -- | -0.229 | -0.587 | 8.18 | 0.2566 | 152 | -- | -- |
| 50.64 | 0.331 | 13.8 | -1.35 | 2.77 | 1.02 | -- | -- | -0.598 | 8.18 | 0.2692 | 156 | -- | -- |
| 77.39 | 0.41 | 13.8 | -1.64 | -- | 3.4 | -- | 0.0258 | -0.337 | -- | 0.8399 | 826 | -- | -- |
| 62.77 | 0.371 | 13.8 | -1.44 | 2.71 | -- | -0.22 | -- | -0.643 | 6.53 | -- | -- | -- | -- |
| 62.89 | 0.371 | 13.8 | -1.44 | 2.71 | -- | -- | -- | -0.642 | 6.53 | -- | -- | -- | -- |
| 62.59 | 0.368 | 13.8 | -1.06 | -- | 3.75 | -- | -- | -0.467 | -- | 0.3307 | 818 | -- | -- |
| 97.77 | 0.461 | 13.8 | -- | 2.79 | 1.04 | -- | -- | -0.469 | 8.14 | 7.51e-07 | 162 | -- | -- |
| 445.14 | 0.986 | 13.9 | -1.37 | -- | -- | -- | -- | -0.587 | -- | -- | -- | -- | -- |
| 117.5 | 0.507 | 13.8 | -- | 2.69 | -- | -- | -- | -0.482 | 6.56 | -- | -- | -- | -- |
| 90.73 | 0.444 | 13.8 | -- | -- | 3.81 | -- | -- | -0.38 | -- | 0.003466 | 814 | -- | -- |
| 494.83 | 1.04 | 13.8 | -- | -- | -- | -- | -- | -0.434 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.14 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 17 | 11 |
| 2 | 43.26 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 14 |
| 3 | 43.26 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 4 | 43.49 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 11 |
| 5 | 43.60 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 10 |
| 9 | 43.71 | humidity | 60.0 | 270 | > th | dose independent | rect. | 18 | 10 |
| 15 | 43.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 10 |
| 20 | 43.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 14 |
| 21 | 43.79 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 14 |
| 26 | 44.15 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 10 |
| 27 | 44.23 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 10 |
| 29 | 44.42 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 14 |
| 31 | 44.57 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 14 |
| 33 | 44.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 10 |
| 34 | 44.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 10 |
| 35 | 44.81 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 49 | 45.55 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 52 | 45.62 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 19 |
| 53 | 45.62 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 19 |
| 55 | 45.67 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 58 | 45.80 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 65 | 45.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 66 | 45.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 67 | 45.95 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 5 |
| 68 | 45.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 69 | 45.98 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 5 |
| 70 | 45.98 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 5 |
| 79 | 46.19 | radiation | 1.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 86 | 46.21 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 5 |
| 98 | 46.41 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 18 |
| 100 | 46.43 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 4 |
| 101 | 46.43 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 19 |
| 132 | 46.83 | radiation | 1.0 | 270 | > th | dose independent | sin | 13 | NA |
| 134 | 46.87 | radiation | 1.0 | 270 | < th | dose independent | sin | 13 | NA |
| 138 | 46.93 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 179 | 47.07 | radiation | 1.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 222 | 47.37 | radiation | 1.0 | 90 | < th | dose independent | sin | 11 | NA |
| 280 | 47.95 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 10 |
| 285 | 47.98 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 19 | 10 |
| 290 | 48.00 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 291 | 48.01 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 20 | 11 |
| 311 | 48.14 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 16 | 18 |
| 319 | 48.20 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 18 |
| 322 | 48.20 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 323 | 48.21 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 332 | 48.26 | temperature | 10.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 334 | 48.26 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 10 | 6 |
| 335 | 48.26 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 10 | 6 |
| 336 | 48.26 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 18 |
| 339 | 48.26 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 10 | 6 |
| 374 | 48.41 | wind | 1.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 377 | 48.43 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 384 | 48.47 | humidity | 50.0 | 90 | > th | dose independent | rect. | 15 | 18 |
| 393 | 48.50 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 16 |
| 401 | 48.53 | wind | 9.0 | 10 | < th | dose independent | rect. | 16 | 18 |
| 405 | 48.55 | humidity | 50.0 | 10 | > th | dose independent | rect. | 16 | 18 |
| 419 | 48.59 | radiation | 40.0 | 10 | < th | dose independent | rect. | 16 | 18 |
| 430 | 48.67 | wind | 9.0 | 10 | < th | dose independent | rect. | 10 | 6 |
| 438 | 48.69 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 20 |
| 469 | 48.84 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 10 | 5 |
| 526 | 48.92 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 555 | 49.04 | humidity | 50.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 564 | 49.06 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 19 |
| 566 | 49.07 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 13 | 19 |
| 570 | 49.09 | wind | 1.0 | 270 | > th | dose dependent | rect. | 15 | 2 |
| 574 | 49.11 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 581 | 49.11 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 18 |
| 584 | 49.11 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 594 | 49.14 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 599 | 49.16 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 3 |
| 650 | 49.29 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 13 | 5 |
| 698 | 49.38 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 739 | 49.46 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 741 | 49.47 | wind | 3.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 773 | 49.55 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 3 |
| 774 | 49.56 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 5 |
| 776 | 49.56 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 786 | 49.58 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 10 |
| 791 | 49.59 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 14 | 3 |
| 803 | 49.60 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 19 |
| 835 | 49.69 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 839 | 49.70 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 841 | 49.70 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 842 | 49.70 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 844 | 49.70 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 845 | 49.70 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 849 | 49.70 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 19 |
| 892 | 49.81 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 914 | 49.83 | humidity | 90.0 | 270 | < th | dose independent | rect. | 9 | 4 |
| 933 | 49.87 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 944 | 49.89 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 10 |
| 947 | 49.89 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 10 |
| 951 | 49.90 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 19 |
| 954 | 49.91 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 13 | 5 |
| 968 | 49.94 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 974 | 49.95 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 2 |
| 976 | 49.95 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 2 |
| 985 | 49.97 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 986 | 49.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 3 |
| 990 | 49.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 999 | 50.01 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 2 |