Os04g0517300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF647 family protein.
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Os04g0517300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF647 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.68 | 0.208 | 10.9 | -0.763 | 0.603 | 0.16 | -0.138 | -0.82 | -0.149 | 22.6 | 20.18 | 2665 | -- | -- |
| 20.5 | 0.211 | 10.9 | -0.621 | 0.622 | 0.309 | -0.253 | -- | -0.102 | 22.5 | 18.59 | 4125 | -- | -- |
| 19.74 | 0.207 | 10.9 | -0.763 | 0.604 | 0.148 | -- | -0.862 | -0.15 | 22.6 | 20.3 | 2625 | -- | -- |
| 20.35 | 0.21 | 10.9 | -0.636 | 0.606 | 0.423 | -- | -- | -0.116 | 22.5 | 18.4 | 2783 | -- | -- |
| 40.79 | 0.297 | 10.9 | -0.672 | -- | 0.309 | -- | -0.428 | -0.13 | -- | 21.2 | 833 | -- | -- |
| 22.63 | 0.223 | 10.9 | -0.465 | 0.611 | -- | -0.178 | -- | -0.042 | 22.7 | -- | -- | -- | -- |
| 22.76 | 0.223 | 10.9 | -0.457 | 0.612 | -- | -- | -- | -0.0414 | 22.6 | -- | -- | -- | -- |
| 41.32 | 0.299 | 10.9 | -0.607 | -- | 0.374 | -- | -- | -0.147 | -- | 20.7 | 845 | -- | -- |
| 24.92 | 0.233 | 10.8 | -- | 0.615 | -0.268 | -- | -- | 0.102 | 22.7 | 21.7 | 47520 | -- | -- |
| 45.86 | 0.316 | 10.9 | -0.446 | -- | -- | -- | -- | -0.0382 | -- | -- | -- | -- | -- |
| 28.27 | 0.249 | 10.9 | -- | 0.609 | -- | -- | -- | 0.00954 | 22.6 | -- | -- | -- | -- |
| 48.34 | 0.324 | 10.8 | -- | -- | -0.243 | -- | -- | 0.0948 | -- | 21.77 | 47520 | -- | -- |
| 51.1 | 0.334 | 10.8 | -- | -- | -- | -- | -- | 0.0112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.10 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 2 | 19.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 3 | 19.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 9 | 19.14 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 18 |
| 15 | 19.15 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 20 | 19.17 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 29 | 19.18 | radiation | 10 | 30 | < th | dose dependent | rect. | 7 | 21 |
| 37 | 19.20 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 38 | 19.20 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 15 |
| 39 | 19.21 | atmosphere | 995 | 43200 | > th | dose independent | sin | 6 | NA |
| 40 | 19.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 41 | 19.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 42 | 19.21 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 43 | 19.21 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 46 | 19.21 | radiation | 10 | 90 | < th | dose independent | rect. | 7 | 21 |
| 55 | 19.22 | wind | 9 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 66 | 19.23 | wind | 9 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 77 | 19.24 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 21 |
| 78 | 19.24 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 82 | 19.25 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 94 | 19.25 | wind | 9 | 43200 | < th | dose independent | rect. | 21 | 20 |
| 111 | 19.27 | atmosphere | 995 | 43200 | < th | dose independent | sin | 6 | NA |
| 119 | 19.27 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 18 |
| 132 | 19.28 | wind | 9 | 43200 | > th | dose independent | sin | 0 | NA |
| 149 | 19.29 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 154 | 19.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 161 | 19.30 | wind | 9 | 43200 | < th | dose independent | sin | 1 | NA |
| 181 | 19.30 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 16 | NA |
| 210 | 19.32 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 229 | 19.33 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 256 | 19.33 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 262 | 19.34 | wind | 9 | 43200 | > th | dose independent | no | NA | NA |
| 297 | 19.34 | wind | 9 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 300 | 19.34 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 307 | 19.35 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 364 | 19.36 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 367 | 19.36 | wind | 7 | 43200 | > th | dose dependent | rect. | 4 | 12 |
| 368 | 19.36 | wind | 7 | 43200 | > th | dose dependent | rect. | 21 | 20 |
| 372 | 19.37 | wind | 9 | 43200 | < th | dose independent | no | NA | NA |
| 394 | 19.37 | wind | 9 | 43200 | < th | dose independent | rect. | 4 | 20 |
| 402 | 19.37 | wind | 9 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 407 | 19.37 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 452 | 19.38 | wind | 9 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 460 | 19.38 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 8 |
| 466 | 19.38 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 470 | 19.39 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 471 | 19.39 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 497 | 19.39 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 506 | 19.40 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 543 | 19.40 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 12 |
| 587 | 19.42 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 18 |
| 597 | 19.42 | wind | 7 | 43200 | > th | dose dependent | sin | 1 | NA |
| 614 | 19.43 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 615 | 19.43 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 645 | 19.43 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 661 | 19.44 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 710 | 19.46 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 726 | 19.46 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 18 |
| 733 | 19.46 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |
| 738 | 19.46 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 22 |
| 741 | 19.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 742 | 19.47 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 780 | 19.47 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 785 | 19.47 | wind | 7 | 43200 | > th | dose dependent | rect. | 3 | 20 |
| 794 | 19.47 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 22 |
| 799 | 19.47 | wind | 7 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 825 | 19.48 | wind | 9 | 43200 | > th | dose dependent | sin | 19 | NA |
| 829 | 19.48 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 18 |
| 879 | 19.50 | wind | 7 | 43200 | < th | dose independent | sin | 12 | NA |
| 958 | 19.52 | wind | 7 | 43200 | > th | dose independent | sin | 12 | NA |