BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0517300 Os04g0517300|AK069879
(438 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0517300 Protein of unknown function DUF647 family protein 900 0.0
Os05g0419200 Protein of unknown function DUF647 family protein 153 2e-37
Os01g0141600 Protein of unknown function DUF647 family protein 93 5e-19
>Os04g0517300 Protein of unknown function DUF647 family protein
Length = 438
Score = 900 bits (2327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/438 (100%), Positives = 438/438 (100%)
Query: 1 MNILERIRGGGDRAAVGEGPREPEPWVEISESISRLCSFDAGRVSVKVIQDSRPIHDKMI 60
MNILERIRGGGDRAAVGEGPREPEPWVEISESISRLCSFDAGRVSVKVIQDSRPIHDKMI
Sbjct: 1 MNILERIRGGGDRAAVGEGPREPEPWVEISESISRLCSFDAGRVSVKVIQDSRPIHDKMI 60
Query: 61 DSFLNKFFPSGYPYSVNEGYLTYTKFRALQHFSSAMLHVLSTQSLLFAAGLRPTPAQATA 120
DSFLNKFFPSGYPYSVNEGYLTYTKFRALQHFSSAMLHVLSTQSLLFAAGLRPTPAQATA
Sbjct: 61 DSFLNKFFPSGYPYSVNEGYLTYTKFRALQHFSSAMLHVLSTQSLLFAAGLRPTPAQATA 120
Query: 121 VSWILKDGMQHAGKLICSGMGARMDSEPKSWRILADVLYDFGTALEVISPLCPQLFLEVA 180
VSWILKDGMQHAGKLICSGMGARMDSEPKSWRILADVLYDFGTALEVISPLCPQLFLEVA
Sbjct: 121 VSWILKDGMQHAGKLICSGMGARMDSEPKSWRILADVLYDFGTALEVISPLCPQLFLEVA 180
Query: 181 GFGNFAKGMAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVMGIGAGIGLASTV 240
GFGNFAKGMAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVMGIGAGIGLASTV
Sbjct: 181 GFGNFAKGMAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVMGIGAGIGLASTV 240
Query: 241 CSTTQGKLIAGPLLSVVHIYGVVQEMRATPVNTLNPQRTAMIVADFIKSGKVSSPAELRY 300
CSTTQGKLIAGPLLSVVHIYGVVQEMRATPVNTLNPQRTAMIVADFIKSGKVSSPAELRY
Sbjct: 241 CSTTQGKLIAGPLLSVVHIYGVVQEMRATPVNTLNPQRTAMIVADFIKSGKVSSPAELRY 300
Query: 301 REDLLFPNRLIEEAGSVKIGQPVRRVLSPQRIEQLKATFSKEKFLLSRKDNSAYMVLEQS 360
REDLLFPNRLIEEAGSVKIGQPVRRVLSPQRIEQLKATFSKEKFLLSRKDNSAYMVLEQS
Sbjct: 301 REDLLFPNRLIEEAGSVKIGQPVRRVLSPQRIEQLKATFSKEKFLLSRKDNSAYMVLEQS 360
Query: 361 ATGEDALRGWLVAAFASEMERSGVGSGDTVLNVAYERMENVFPMFVAEVKSRGWYTDQFL 420
ATGEDALRGWLVAAFASEMERSGVGSGDTVLNVAYERMENVFPMFVAEVKSRGWYTDQFL
Sbjct: 361 ATGEDALRGWLVAAFASEMERSGVGSGDTVLNVAYERMENVFPMFVAEVKSRGWYTDQFL 420
Query: 421 DGNRSRIAYANPISGSAL 438
DGNRSRIAYANPISGSAL
Sbjct: 421 DGNRSRIAYANPISGSAL 438
>Os05g0419200 Protein of unknown function DUF647 family protein
Length = 415
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/355 (31%), Positives = 182/355 (51%), Gaps = 24/355 (6%)
Query: 54 PIHDKMIDSFLNKFF-PSGYPYSVNEGYLTYTKFRALQHFSSAMLHVLSTQSLLFAAGLR 112
P+ + M SF+ + P G+P SV Y+ Y +RAL+HF + V +T++LL + G+
Sbjct: 16 PVEEIM--SFIRSYVVPEGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTRTLLNSVGVA 73
Query: 113 PTPAQ--ATAVSWILKDGMQHAGKLICSGMGARMDSEPKSWRILADVLYDFGTALEVISP 170
+ A A A++WILKDG GK++ + G + D + K R D+L + G +E+ +
Sbjct: 74 QSRATSGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFSGDLLMELGAGIELATA 133
Query: 171 LCPQLFLEVAGFGNFAKGMAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVMGI 230
PQLFL +A N K +A V + +TR PIY ++AK N+ D+ AKGE++ + +++G
Sbjct: 134 AFPQLFLPMACIANVVKNVAAVTSTSTRTPIYKAYAKGENIGDVTAKGESVGNIADLLGT 193
Query: 231 GAGIGLASTVCS--TTQGKLIAGPLLSVVHIYGVVQEMRATPVNTLNPQRTAMIVADFIK 288
G I ++ S T+ L G LLS H E+R+ +NTLN R + V FIK
Sbjct: 194 GLSILISKRNPSLVTSFAFLSCGYLLSSYH------EVRSVVLNTLNTARFTVAVDSFIK 247
Query: 289 SGKVSSPAELRYREDLLFPN-RLIEEAGSVKIGQPVRRVLSPQRIEQLKATFSKEKFLLS 347
SG V S E +E + P R A + G+ + P ++ F E+++++
Sbjct: 248 SGHVPSLKEGNSQETIFNPPWRHQPVAIGSRFGEAFQE---PASFVAIRPLFEDERYIVT 304
Query: 348 RK--DNSAYMVLEQSATGEDALRGWLVAAFASEMERSGVGSGDTVLNVAYERMEN 400
+ Y +L+ A +D L+ AAF + + + + LN A +RM +
Sbjct: 305 YNPTKDKVYALLKDQAKPDDILK----AAFHAHVLLHFINASHANLN-ARKRMNS 354
>Os01g0141600 Protein of unknown function DUF647 family protein
Length = 323
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 94/182 (51%), Gaps = 14/182 (7%)
Query: 68 FPSGYPYSVNEGYLTYTKFRALQHFSSAMLHVLSTQSLLFAAGL-----RPTPAQATAVS 122
P+G+P SV++ YL Y ++ + + + H L T +LL A G+ A A A+
Sbjct: 108 LPAGFPGSVSDDYLEYMLWQLPTNVTGWICHTLVTSTLLKAVGVGSFTGTSAAASAAAIR 167
Query: 123 WILKDGMQHAGKLICSG-MGARMDSEPKSWRILADVLYDFGTALEVISPLCPQLFLEVAG 181
W+ KDG+ G+L+ G G D +PK WR+ AD + G+ E+I+PL P FL +A
Sbjct: 168 WVSKDGIGAFGRLLIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITPLYPGYFLPLAS 227
Query: 182 FGNFAKGMAVVAARATRLP----IYSSFAKEGNLSDLFAKGEAISTLFNVMGIGAGIGLA 237
GN AK + R R P I + FA+ GNL ++ AK E ++G+ G+ +
Sbjct: 228 LGNLAKAV----GRGFRDPSFRVIQNHFAESGNLGEVAAKEEVWEVGAQLLGLSIGVFIM 283
Query: 238 ST 239
T
Sbjct: 284 DT 285
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,588,469
Number of extensions: 605247
Number of successful extensions: 1487
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1483
Number of HSP's successfully gapped: 3
Length of query: 438
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 334
Effective length of database: 11,605,545
Effective search space: 3876252030
Effective search space used: 3876252030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)