Os01g0141600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF647 family protein.
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Os01g0141600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF647 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.56 | 0.292 | 11.9 | -1.83 | 0.882 | -1.16 | -0.25 | -1.06 | -0.461 | 19.6 | 15.56 | 303 | -- | -- |
| 39.16 | 0.291 | 11.9 | -1.65 | 0.886 | -1.13 | -0.402 | -- | -0.409 | 19.6 | 16.85 | 300 | -- | -- |
| 38.61 | 0.289 | 11.9 | -1.84 | 0.901 | -1.09 | -- | -1.08 | -0.466 | 19.8 | 16.5 | 365 | -- | -- |
| 39.39 | 0.292 | 11.9 | -1.67 | 0.908 | -1.04 | -- | -- | -0.413 | 19.7 | 18.59 | 345 | -- | -- |
| 64.2 | 0.375 | 11.9 | -1.83 | -- | -0.934 | -- | -0.628 | -0.484 | -- | 16.5 | 365 | -- | -- |
| 56.27 | 0.352 | 11.9 | -1.93 | 0.648 | -- | -0.263 | -- | -0.593 | 21 | -- | -- | -- | -- |
| 56.48 | 0.352 | 11.9 | -1.92 | 0.647 | -- | -- | -- | -0.593 | 21.1 | -- | -- | -- | -- |
| 64.41 | 0.375 | 11.8 | -1.74 | -- | -0.866 | -- | -- | -0.458 | -- | 18.59 | 345 | -- | -- |
| 58.44 | 0.356 | 11.7 | -- | 0.665 | -1.57 | -- | -- | 0.0889 | 21.2 | 1.93 | 47520 | -- | -- |
| 80.61 | 0.42 | 11.9 | -1.92 | -- | -- | -- | -- | -0.597 | -- | -- | -- | -- | -- |
| 153.38 | 0.579 | 11.8 | -- | 0.65 | -- | -- | -- | -0.38 | 20.8 | -- | -- | -- | -- |
| 84.09 | 0.427 | 11.7 | -- | -- | -1.55 | -- | -- | 0.0808 | -- | -0.5312 | 47520 | -- | -- |
| 177.46 | 0.622 | 11.8 | -- | -- | -- | -- | -- | -0.384 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 20 | 38.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 26 | 38.40 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 33 | 38.47 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 41 | 38.63 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 51 | 38.74 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 141 | 39.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 159 | 39.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 174 | 39.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 183 | 39.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 222 | 39.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 246 | 40.12 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 267 | 40.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 289 | 40.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 18 |
| 358 | 40.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 365 | 40.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 15 |
| 370 | 40.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 375 | 40.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 415 | 40.54 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 17 |
| 459 | 40.62 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 8 |
| 468 | 40.63 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 547 | 40.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 577 | 40.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 589 | 40.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 618 | 40.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 629 | 40.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 696 | 40.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 727 | 40.94 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 10 |
| 745 | 40.96 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 756 | 40.97 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 5 |
| 837 | 41.06 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 13 |
| 840 | 41.06 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 894 | 41.09 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |