BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0141600 Os01g0141600|AK066922
         (323 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0141600  Protein of unknown function DUF647 family protein   544   e-155
Os05g0419200  Protein of unknown function DUF647 family protein    99   5e-21
Os04g0517300  Protein of unknown function DUF647 family protein    93   3e-19

>Os01g0141600 Protein of unknown function DUF647 family protein
          Length = 323

 Score =  544 bits (1402), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/323 (85%), Positives = 275/323 (85%)

Query: 1   MLSXXXXXXXXXSFHGGXXXXXXXXXXXXXXXXXXXXXXXXDCRESEKARRLLVERYQDG 60
           MLS         SFHGG                        DCRESEKARRLLVERYQDG
Sbjct: 1   MLSAAAAAAADASFHGGAPRRRRPRLRSCLASPPASGGGGGDCRESEKARRLLVERYQDG 60

Query: 61  VSKRYILDGNSKLQIHQEKNEHMANTLXXXXXXXANSSIPRAIKDFVLPAGFPGSVSDDY 120
           VSKRYILDGNSKLQIHQEKNEHMANTL       ANSSIPRAIKDFVLPAGFPGSVSDDY
Sbjct: 61  VSKRYILDGNSKLQIHQEKNEHMANTLEEEEKEEANSSIPRAIKDFVLPAGFPGSVSDDY 120

Query: 121 LEYMLWQLPTNVTGWICHTLVTSTLLKAVGVGSFTGTXXXXXXXXIRWVSKDGIGAFGRL 180
           LEYMLWQLPTNVTGWICHTLVTSTLLKAVGVGSFTGT        IRWVSKDGIGAFGRL
Sbjct: 121 LEYMLWQLPTNVTGWICHTLVTSTLLKAVGVGSFTGTSAAASAAAIRWVSKDGIGAFGRL 180

Query: 181 LIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITPLYPGYFLPLASLGNLAKAVGRGFR 240
           LIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITPLYPGYFLPLASLGNLAKAVGRGFR
Sbjct: 181 LIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITPLYPGYFLPLASLGNLAKAVGRGFR 240

Query: 241 DPSFRVIQNHFAESGNLGEVAAKEEVWEVGAQLLGLSIGVFIMDTSGIKSSYPTLALTWL 300
           DPSFRVIQNHFAESGNLGEVAAKEEVWEVGAQLLGLSIGVFIMDTSGIKSSYPTLALTWL
Sbjct: 241 DPSFRVIQNHFAESGNLGEVAAKEEVWEVGAQLLGLSIGVFIMDTSGIKSSYPTLALTWL 300

Query: 301 GVRLLHLWFRYQSLSVLKFRTVR 323
           GVRLLHLWFRYQSLSVLKFRTVR
Sbjct: 301 GVRLLHLWFRYQSLSVLKFRTVR 323



>Os05g0419200 Protein of unknown function DUF647 family protein
          Length = 415

 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 87/180 (48%), Gaps = 4/180 (2%)

Query: 103 IKDFVLPAGFPGSVSDDYLEYMLWQLPTNVTGWICHTLVTSTLLKAVGVGSFTGTXXXXX 162
           I+ +V+P GFP SV+  Y+ YM W+   +  G       T TLL +VGV     T     
Sbjct: 24  IRSYVVPEGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTRTLLNSVGVAQSRATSGAVA 83

Query: 163 XXXIRWVSKDGIGAFGRLLIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITPLYPGYF 222
              I W+ KDG G  G++L   R G  FD D K+ R   D +   G+  EL T  +P  F
Sbjct: 84  ---INWILKDGAGRVGKMLFA-RQGKKFDYDLKQLRFSGDLLMELGAGIELATAAFPQLF 139

Query: 223 LPLASLGNLAKAVGRGFRDPSFRVIQNHFAESGNLGEVAAKEEVWEVGAQLLGLSIGVFI 282
           LP+A + N+ K V       +   I   +A+  N+G+V AK E     A LLG  + + I
Sbjct: 140 LPMACIANVVKNVAAVTSTSTRTPIYKAYAKGENIGDVTAKGESVGNIADLLGTGLSILI 199



>Os04g0517300 Protein of unknown function DUF647 family protein
          Length = 438

 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 14/182 (7%)

Query: 108 LPAGFPGSVSDDYLEYMLWQLPTNVTGWICHTLVTSTLLKAVGVGSFTGTXXXXXXXXIR 167
            P+G+P SV++ YL Y  ++   + +  + H L T +LL A G+              + 
Sbjct: 68  FPSGYPYSVNEGYLTYTKFRALQHFSSAMLHVLSTQSLLFAAGL-----RPTPAQATAVS 122

Query: 168 WVSKDGIGAFGRLLIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITPLYPGYFLPLAS 227
           W+ KDG+   G+L+  G  G   D +PK WR+ AD +   G+  E+I+PL P  FL +A 
Sbjct: 123 WILKDGMQHAGKLICSG-MGARMDSEPKSWRILADVLYDFGTALEVISPLCPQLFLEVAG 181

Query: 228 LGNLAKAV----GRGFRDPSFRVIQNHFAESGNLGEVAAKEEVWEVGAQLLGLSIGVFIM 283
            GN AK +     R  R P    I + FA+ GNL ++ AK E       ++G+  G+ + 
Sbjct: 182 FGNFAKGMAVVAARATRLP----IYSSFAKEGNLSDLFAKGEAISTLFNVMGIGAGIGLA 237

Query: 284 DT 285
            T
Sbjct: 238 ST 239



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,508,807
Number of extensions: 372852
Number of successful extensions: 604
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 599
Number of HSP's successfully gapped: 3
Length of query: 323
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 222
Effective length of database: 11,762,187
Effective search space: 2611205514
Effective search space used: 2611205514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)