BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0141600 Os01g0141600|AK066922
(323 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G01510.1 | chr5:201702-205151 FORWARD LENGTH=510 358 2e-99
AT3G45890.1 | chr3:16871697-16874100 FORWARD LENGTH=609 114 1e-25
AT1G13770.1 | chr1:4721717-4724345 FORWARD LENGTH=441 107 8e-24
AT2G23470.1 | chr2:9999105-10001398 REVERSE LENGTH=521 98 5e-21
AT5G49820.1 | chr5:20246753-20249432 REVERSE LENGTH=498 96 3e-20
AT2G31190.1 | chr2:13291458-13293681 REVERSE LENGTH=434 89 3e-18
>AT5G01510.1 | chr5:201702-205151 FORWARD LENGTH=510
Length = 509
Score = 358 bits (920), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 182/283 (64%), Positives = 212/283 (74%), Gaps = 7/283 (2%)
Query: 47 EKARRLLVERYQDGVSKRYILDGN-SKLQIHQEKNEHMANTLXXXXXXXANSSI--PRAI 103
E+ ++VERY +G SKRY LD + S LQ E+ E + + + P +
Sbjct: 56 ERRISIVVERYGNGTSKRYFLDDDDSPLQGILEERETKPDNNSQSSNSSETNILWLPDVV 115
Query: 104 KDFVLPAGFPGSVSDDYLEYMLWQLPTNVTGWICHTLVTSTLLKAVGVGSFTGTXXXXXX 163
+DFV P+GFPGSVSDDYL+YMLWQ PTN+TGWIC+ LVTS+LLKAVGVGSF+GT
Sbjct: 116 RDFVFPSGFPGSVSDDYLDYMLWQFPTNITGWICNVLVTSSLLKAVGVGSFSGTSAAATA 175
Query: 164 XX----IRWVSKDGIGAFGRLLIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITPLYP 219
IRWVSKDGIGA GRLLIGGRFG+LFDDDPK+WRMYADFIGSAGS F+L T LYP
Sbjct: 176 AASAAAIRWVSKDGIGALGRLLIGGRFGSLFDDDPKQWRMYADFIGSAGSFFDLATQLYP 235
Query: 220 GYFLPLASLGNLAKAVGRGFRDPSFRVIQNHFAESGNLGEVAAKEEVWEVGAQLLGLSIG 279
FL LAS GNLAKAV RG RDPSFRVIQNHFA SGNLGEVAAKEEVWEV AQL+GL G
Sbjct: 236 SQFLLLASTGNLAKAVARGLRDPSFRVIQNHFAISGNLGEVAAKEEVWEVAAQLIGLGFG 295
Query: 280 VFIMDTSGIKSSYPTLALTWLGVRLLHLWFRYQSLSVLKFRTV 322
+ I+DT G+ S+P + LTW +RL+HLW RYQSL+VL+F TV
Sbjct: 296 ILIIDTPGLVKSFPFVLLTWTSIRLVHLWLRYQSLAVLQFNTV 338
>AT3G45890.1 | chr3:16871697-16874100 FORWARD LENGTH=609
Length = 608
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 9/221 (4%)
Query: 103 IKDFVLPAGFPGSVSDDYLEYMLWQLPTNVTGWICHTLVTSTLLKAVGVGSFTGTXXXXX 162
+ F+LP GFP SV+ DYL+Y LW+ + I L T +LL AVG+G
Sbjct: 194 LTQFLLPEGFPNSVTSDYLDYSLWRGVQGIASQISGVLATQSLLYAVGLGK----GAIPT 249
Query: 163 XXXIRWVSKDGIGAFGRLLIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITPLYPGYF 222
I WV KDGIG ++++ ++G FD PK WR++AD + +A E++TP++P +F
Sbjct: 250 AAAINWVLKDGIGYLSKIMLS-KYGRHFDVHPKGWRLFADLLENAAFGMEMLTPVFPQFF 308
Query: 223 LPLASLGNLAKAVGRGFRDPSFRVIQNHFAESGNLGEVAAKEEVWEVGAQLLGLSIGVFI 282
+ + + ++ + + FA N EV AK E + ++ +G+ +G+ +
Sbjct: 309 VMIGAAAGAGRSAAALIQAATRSCFNAGFASQRNFAEVIAKGEAQGMVSKSVGILLGIVV 368
Query: 283 MDTSGIKSSYPTLALTWLG-VRLLHLWFRYQSLSVLKFRTV 322
+ G +S LAL G V +H++ +S ++ RT+
Sbjct: 369 ANCIGTSTS---LALAAFGVVTTIHMYTNLKSYQCIQLRTL 406
>AT1G13770.1 | chr1:4721717-4724345 FORWARD LENGTH=441
Length = 440
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 116/223 (52%), Gaps = 8/223 (3%)
Query: 101 RAIKDFVLPAGFPGSVSDDYLEYMLWQLPTNVTGWICHTLVTSTLLKAVGVGSFTGTXXX 160
R ++ FV P GFPGSV+ DY+ + LW ++ + L T LL A+GVG + T
Sbjct: 52 RVLQAFV-PEGFPGSVTPDYVGFQLWDTLQGLSTYTKMMLSTQALLSAIGVGEKSATVIG 110
Query: 161 XXXXXIRWVSKDGIGAFGRLLIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITPLYPG 220
+W +D G G +L G+ D + K WR+ AD + G + +L++PL+P
Sbjct: 111 AT---FQWFLRDFTGMLGGILFTFYQGSNLDSNAKMWRLVADLMNDIGMLMDLLSPLFPS 167
Query: 221 YFLPLASLGNLAKAVGRGFRDPSFRVIQNHFAESGNLGEVAAKEEVWEVGAQLLGLSIGV 280
F+ + LG+L+++ + + HFA N +++AKE E A ++G+S+G+
Sbjct: 168 AFIVVVCLGSLSRSFTGVASGATRAALTQHFALQDNAADISAKEGSQETMATMMGMSLGM 227
Query: 281 FIMD-TSGIKSSYPTLALTWLGVRLLHLWFRYQSLSVLKFRTV 322
+ TSG + + L++L + + H++ Y+++ L ++
Sbjct: 228 LLARFTSG---NPMAIWLSFLSLTVFHMYANYRAVRCLVLNSL 267
>AT2G23470.1 | chr2:9999105-10001398 REVERSE LENGTH=521
Length = 520
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 106/230 (46%), Gaps = 16/230 (6%)
Query: 46 SEKARRLLVERYQDGVSKRYILDGNSK--LQIHQEKNEHMANTLXXX----XXXXANSSI 99
S ARRL + + G RY + G+S L + +E+++ + L SS
Sbjct: 59 SNVARRLPIIIKKSGKVSRYFIKGDSLELLCVDEEEDDSTSFCLGLDDGFWKLIRLTSS- 117
Query: 100 PRAIKDFVLPAGFPGSVSDDYLEYMLWQLPTNVTGWICHTLVTSTLLKAVGVGSFTGTXX 159
A KDF LP VSD+Y+ Y+ W+ V L T + +A+G+G +
Sbjct: 118 --AAKDFFLPK----QVSDNYISYVKWKFLHRVFSSALQVLATQAMFRAIGIGQ---SRS 168
Query: 160 XXXXXXIRWVSKDGIGAFGRLLIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITPLYP 219
W+ KDG+G R + + FD + K+ R + S EL+TP++P
Sbjct: 169 LASSAAFNWILKDGLGRLSRCIYTASLASAFDTNLKRVRFSTSVLFSLSIGVELMTPVFP 228
Query: 220 GYFLPLASLGNLAKAVGRGFRDPSFRVIQNHFAESGNLGEVAAKEEVWEV 269
YFL LAS+ N+AK + + + FA + NLGEV+AK ++ V
Sbjct: 229 QYFLLLASIANIAKQISLSCYLATGSAVHRSFAVADNLGEVSAKAQIQTV 278
>AT5G49820.1 | chr5:20246753-20249432 REVERSE LENGTH=498
Length = 497
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 100/220 (45%), Gaps = 10/220 (4%)
Query: 103 IKDFVLPAGFPGSVSDDYLEYMLWQLPTNVTGWICHTLVTSTLLKAVGVGSFTGTXXXXX 162
++ +V+P GFPGSV++ Y+ YM W+ + G T TLL +VG +
Sbjct: 108 LRSYVVPEGFPGSVNESYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGA---SRNSSASA 164
Query: 163 XXXIRWVSKDGIGAFGRLLIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITPLYPGYF 222
I W+ KDG G G++L R G FD D K+ R D + G+ EL T P F
Sbjct: 165 AVAINWILKDGAGRVGKMLFA-RQGKKFDYDLKQLRFAGDLLMELGAGVELATAAVPHLF 223
Query: 223 LPLASLGNLAKAVGRGFRDPSFRVIQNHFAESGNLGEVAAKEEVWEVGAQLLGLSIGVFI 282
LPLA N+ K V + I FA+ N+G+V AK E A L+G + I
Sbjct: 224 LPLACAANVVKNVAAVTSTSTRTPIYKAFAKGENIGDVTAKGECVGNIADLMGTGFSILI 283
Query: 283 MDTSGIKSSYPTLALTWLGVRLLHLWFRYQSLSVLKFRTV 322
+ P+L T+ + +L YQ + + T+
Sbjct: 284 SKRN------PSLVTTFGLLSCGYLMSSYQEVRSVVLHTL 317
>AT2G31190.1 | chr2:13291458-13293681 REVERSE LENGTH=434
Length = 433
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 108 LPAGFPGSVSDDYLEYMLWQLPTNVTGWICHTLVTSTLLKAVGVGSFTGTXXXXXXXXIR 167
P+G+P SV++ YL Y ++ + + L T +LL A G+ +
Sbjct: 72 FPSGYPYSVNEGYLRYTQFRALQHFSSAALSVLSTQSLLFAAGLRPTPAQATV-----VS 126
Query: 168 WVSKDGIGAFGRLLIGGRFGTLFDDDPKKWRMYADFIGSAGSIFELITPLYPGYFLPLAS 227
W+ KDG+ G+L I G D +PK+WR+ AD + G+ EL++PL P FL +A
Sbjct: 127 WILKDGMQHVGKL-ICSNLGARMDSEPKRWRILADVLYDLGTGLELVSPLCPHLFLEMAG 185
Query: 228 LGNLAKAV----GRGFRDPSFRVIQNHFAESGNLGEVAAKEEVWEVGAQLLGLSIGVFIM 283
LGN AK + R R P I + FA+ GNL ++ AK E + G+ G+ +
Sbjct: 186 LGNFAKGMATVAARATRLP----IYSSFAKEGNLSDIFAKGEAISTLFNVAGIGAGIQLA 241
Query: 284 DT 285
T
Sbjct: 242 ST 243
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.140 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,132,108
Number of extensions: 243644
Number of successful extensions: 443
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 6
Length of query: 323
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,392,385
Effective search space: 1879894240
Effective search space used: 1879894240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)