BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0411300 Os05g0411300|AK071931
(408 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0411300 Conserved hypothetical protein 665 0.0
Os07g0644100 cAMP response element binding (CREB) protein f... 220 1e-57
Os12g0454800 Similar to Histidine kinase 95 1e-19
>Os05g0411300 Conserved hypothetical protein
Length = 408
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/408 (81%), Positives = 334/408 (81%)
Query: 1 VKSMHSVINDLNSRISFVVAENATLRQQLSGGSVNCXXXXXXXXXXXXGMHFPWMPGYAM 60
VKSMHSVINDLNSRISFVVAENATLRQQLSGGSVNC GMHFPWMPGYAM
Sbjct: 1 VKSMHSVINDLNSRISFVVAENATLRQQLSGGSVNCPPPGVYPPAPIPGMHFPWMPGYAM 60
Query: 61 RPPGSHVPLVPIPRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
RPPGSHVPLVPIPRL
Sbjct: 61 RPPGSHVPLVPIPRLKPQQPVPSSKVVKKPESKKTVENKSKSKTKTKKVASVSLLGLLLI 120
Query: 121 XXVFGAFIPGFNHNFGMCGQSDNAMFRNFGQSHARVLSVSSQDKSSLNNSDMIGVDVGKM 180
VFGAFIPGFNHNFGMCGQSDNAMFRNFGQSHARVLSVSSQDKSSLNNSDMIGVDVGKM
Sbjct: 121 MLVFGAFIPGFNHNFGMCGQSDNAMFRNFGQSHARVLSVSSQDKSSLNNSDMIGVDVGKM 180
Query: 181 TGNTDGPGKKHQPAHNSSEILPALLYVPRNGKHVKINGNLIIHSVLASEKAVAHKASKDD 240
TGNTDGPGKKHQPAHNSSEILPALLYVPRNGKHVKINGNLIIHSVLASEKAVAHKASKDD
Sbjct: 181 TGNTDGPGKKHQPAHNSSEILPALLYVPRNGKHVKINGNLIIHSVLASEKAVAHKASKDD 240
Query: 241 SDQSARDHKETSVAIARYLSLPGKDVNRQETSSADGPLPQWFREGMEGPILNSGMCSEVF 300
SDQSARDHKETSVAIARYLSLPGKDVNRQETSSADGPLPQWFREGMEGPILNSGMCSEVF
Sbjct: 241 SDQSARDHKETSVAIARYLSLPGKDVNRQETSSADGPLPQWFREGMEGPILNSGMCSEVF 300
Query: 301 QFDISTASSNPGGXXXXXXXXXXXXXXXTEKIPAHSAAYHGKLKNRRVMYNEAIPLTDPR 360
QFDISTASSNPGG TEKIPAHSAAYHGKLKNRRVMYNEAIPLTDPR
Sbjct: 301 QFDISTASSNPGGIIPASPVVNSSSVNATEKIPAHSAAYHGKLKNRRVMYNEAIPLTDPR 360
Query: 361 EAGNGDGDPRVSPKPLSKIFVVVLVDGVRYVTYSCTLPFKSSSPHLVN 408
EAGNGDGDPRVSPKPLSKIFVVVLVDGVRYVTYSCTLPFKSSSPHLVN
Sbjct: 361 EAGNGDGDPRVSPKPLSKIFVVVLVDGVRYVTYSCTLPFKSSSPHLVN 408
>Os07g0644100 cAMP response element binding (CREB) protein family protein
Length = 568
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 163/468 (34%), Positives = 209/468 (44%), Gaps = 104/468 (22%)
Query: 1 VKSMHSVINDLNSRISFVVAENATLRQQLSGGSVNCXXXXXXXXXXXXGMH---FPWM-P 56
VK M + I DL +RIS V AENA L+QQL G + ++ PW+ P
Sbjct: 143 VKVMQATIADLTARISCVTAENAALKQQLGGAAGAGAAAPPPPMPMYPAVYPLPMPWIHP 202
Query: 57 GYAMRPPGSHVPLVPIPRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 116
YAMR GS VPLVPIPRL
Sbjct: 203 AYAMR--GSQVPLVPIPRLKTQQPASTPEPPAKKARKTKKVAGVSLLGLLFLMM------ 254
Query: 117 XXXXXXVFGAFIPGFNHNFGMCGQSDNAMFRNFGQSHARVLSVSSQDKSSLNNSDMIGVD 176
V G +P N +G + A H R+L+V S N GVD
Sbjct: 255 ------VCGCLVPAVNRMYGAAYTGEGAAI--VPSHHGRILAVEGPQNSVSN-----GVD 301
Query: 177 VGKMTGNTDGPGKKHQPAHNSSEILPALLYVPRNGKHVKINGNLIIHSVLASEKAVAHKA 236
+ N SE LPALLY+PRNGKHVKINGNL+I S++ASEKA + +
Sbjct: 302 --------------PKVPQNGSETLPALLYLPRNGKHVKINGNLVIKSIVASEKASSRLS 347
Query: 237 SKDDSDQSARDHKETSVAIARYLS--------------------LPGK-DVNRQETSSAD 275
+ + + +ETS+AI Y++ PG + R++ D
Sbjct: 348 NYGEKGSGNQGKEETSLAIPGYVAPLEAGEVMDSAKGMNELMALAPGDGSIYRED----D 403
Query: 276 GPLPQWFREGMEGPILNSGMCSEVFQFDISTASSNPGGXX-XXXXXXXXXXXXXTEKIPA 334
G LPQWF E M GP+LNSGMC+EVFQFD+S +++ G TE +P+
Sbjct: 404 GMLPQWFSEAMSGPMLNSGMCTEVFQFDLSPTTADANGIVPVYSGSVTNTSQNYTENLPS 463
Query: 335 HSAAYHGKLKNRRVMYNEAIP------------------------------------LTD 358
K+KNRR+ Y+EAIP L D
Sbjct: 464 GPVQ---KVKNRRISYSEAIPLRGSTSNDTDHFKAPPKNHSQSHAGRKPVSSVVVSVLAD 520
Query: 359 PREAGNGDGDPRVSPKPLSKIFVVVLVDGVRYVTYSCTLPFKSSSPHL 406
PREA + DG+ R+S LS+IFVVVL+D V+YVTYSC LPFKS SPHL
Sbjct: 521 PREASDRDGEGRISSNSLSRIFVVVLIDSVKYVTYSCVLPFKSHSPHL 568
>Os12g0454800 Similar to Histidine kinase
Length = 948
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 81/136 (59%), Gaps = 12/136 (8%)
Query: 123 VFGAFIPGFNHNFGMCGQSDN-AMFRNFGQSHARVLSVS---SQDKSSLNNSDMIGVDVG 178
V GAF +N GM G+ DN M +NFG S R+L + + K + +SD I VD+
Sbjct: 452 VIGAFDQPYNQPLGMGGEGDNNMMLKNFGFSRGRLLIDTLHGTWTKRGVQSSDTIRVDLR 511
Query: 179 KMTGNTDGPGK--KHQPAHNSSEILPALLYVPRNGKHVKINGNLIIHSVLASEKAVAHKA 236
KMT N D G+ KH +H SSEI PA+LYVP NGK V ++ NLI+ EKA+ +
Sbjct: 512 KMTRNNDSSGQQLKHWSSHKSSEI-PAVLYVPMNGKQVIVHCNLIV-----DEKALVNWI 565
Query: 237 SKDDSDQSARDHKETS 252
S D+DQS++ KET+
Sbjct: 566 SNGDTDQSSKYQKETA 581
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,407,996
Number of extensions: 480328
Number of successful extensions: 1137
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1132
Number of HSP's successfully gapped: 5
Length of query: 408
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 305
Effective length of database: 11,657,759
Effective search space: 3555616495
Effective search space used: 3555616495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)