Os07g0644100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : cAMP response element binding (CREB) protein family protein.
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Os07g0644100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : cAMP response element binding (CREB) protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.01 | 0.37 | 10.5 | 1.14 | 0.887 | -0.719 | 0.418 | -1.33 | 0.514 | 9.35 | 80.12 | 973 | -- | -- |
| 63.73 | 0.372 | 10.5 | 1.21 | 0.896 | -0.773 | 0.718 | -- | 0.526 | 9.33 | 77.58 | 976 | -- | -- |
| 62.49 | 0.368 | 10.5 | 1.13 | 0.881 | -0.711 | -- | -1.64 | 0.512 | 9.26 | 81 | 966 | -- | -- |
| 65.48 | 0.377 | 10.5 | 1.26 | 0.894 | -0.847 | -- | -- | 0.509 | 9.22 | 76 | 976 | -- | -- |
| 84.64 | 0.428 | 10.5 | 1.13 | -- | -1.54 | -- | -1.1 | 0.577 | -- | 104.5 | 814 | -- | -- |
| 75.13 | 0.406 | 10.5 | 1.1 | 1.1 | -- | 0.916 | -- | 0.561 | 9.6 | -- | -- | -- | -- |
| 78.19 | 0.414 | 10.5 | 1.13 | 1.1 | -- | -- | -- | 0.561 | 9.46 | -- | -- | -- | -- |
| 86.38 | 0.433 | 10.5 | 1.21 | -- | -1.59 | -- | -- | 0.591 | -- | 119.1 | 799 | -- | -- |
| 103.61 | 0.474 | 10.5 | -- | 0.845 | -0.774 | -- | -- | 0.447 | 9.09 | 126.7 | 924 | -- | -- |
| 149.84 | 0.572 | 10.5 | 1.12 | -- | -- | -- | -- | 0.565 | -- | -- | -- | -- | -- |
| 111.93 | 0.495 | 10.5 | -- | 1.1 | -- | -- | -- | 0.435 | 9.39 | -- | -- | -- | -- |
| 124.74 | 0.52 | 10.5 | -- | -- | -1.53 | -- | -- | 0.455 | -- | 210.6 | 789 | -- | -- |
| 183.19 | 0.632 | 10.6 | -- | -- | -- | -- | -- | 0.44 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.02 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 22 |
| 2 | 56.02 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 3 | 56.86 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 14 |
| 4 | 56.86 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 14 |
| 5 | 57.15 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 8 | 57.61 | humidity | 90.0 | 720 | < th | dose independent | rect. | 16 | 4 |
| 9 | 57.62 | humidity | 90.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 10 | 57.88 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 16 | 13 |
| 11 | 57.88 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 16 | 13 |
| 26 | 58.86 | humidity | 70.0 | 720 | > th | dose independent | rect. | 14 | 18 |
| 30 | 58.94 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 9 | 10 |
| 31 | 58.94 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 9 | 10 |
| 36 | 59.31 | humidity | 70.0 | 720 | > th | dose independent | rect. | 14 | 10 |
| 39 | 59.40 | humidity | 70.0 | 720 | > th | dose independent | sin | 11 | NA |
| 40 | 59.41 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 1 | 18 |
| 41 | 59.41 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 44 | 59.50 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 47 | 59.58 | humidity | 70.0 | 720 | < th | dose independent | rect. | 16 | 3 |
| 48 | 59.59 | wind | 1.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 55 | 59.66 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 56 | 59.68 | humidity | 70.0 | 720 | < th | dose independent | rect. | 16 | 17 |
| 57 | 59.69 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 16 | 19 |
| 58 | 59.69 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 63 | 59.94 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 16 | 4 |
| 65 | 59.94 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 16 | 4 |
| 85 | 60.09 | humidity | 70.0 | 720 | < th | dose independent | rect. | 17 | 1 |
| 86 | 60.09 | radiation | 1.0 | 720 | > th | dose independent | rect. | 8 | 11 |
| 104 | 60.19 | humidity | 50.0 | 720 | > th | dose independent | rect. | 13 | 18 |
| 106 | 60.22 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 7 |
| 112 | 60.31 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 4 | 14 |
| 123 | 60.43 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 127 | 60.46 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 14 | 10 |
| 138 | 60.59 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 4 | 17 |
| 141 | 60.61 | humidity | 70.0 | 720 | < th | dose independent | sin | 12 | NA |
| 144 | 60.63 | wind | 9.0 | 720 | < th | dose independent | rect. | 7 | 22 |
| 149 | 60.66 | radiation | 1.0 | 720 | > th | dose independent | rect. | 16 | 3 |
| 159 | 60.66 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 17 | 12 |
| 160 | 60.66 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 169 | 60.75 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 11 |
| 170 | 60.75 | wind | 5.0 | 90 | < th | dose independent | rect. | 17 | 12 |
| 173 | 60.76 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 6 |
| 179 | 60.83 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 13 |
| 180 | 60.83 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 183 | 60.87 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 8 |
| 196 | 60.88 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 223 | 61.06 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 2 |
| 224 | 61.06 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 229 | 61.12 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 292 | 61.47 | wind | 7.0 | 270 | < th | dose independent | rect. | 15 | 13 |
| 311 | 61.53 | wind | 9.0 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 321 | 61.56 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 346 | 61.69 | humidity | 50.0 | 720 | > th | dose independent | rect. | 4 | 13 |
| 370 | 61.83 | radiation | 40.0 | 720 | < th | dose independent | rect. | 13 | 18 |
| 389 | 61.92 | humidity | 70.0 | 720 | > th | dose independent | rect. | 4 | 20 |
| 402 | 61.95 | humidity | 50.0 | 720 | > th | dose independent | rect. | 14 | 10 |
| 420 | 61.98 | wind | 9.0 | 720 | < th | dose independent | rect. | 9 | 10 |
| 424 | 62.00 | wind | 9.0 | 720 | < th | dose independent | rect. | 7 | 14 |
| 438 | 62.04 | wind | 9.0 | 720 | < th | dose independent | rect. | 1 | 18 |
| 449 | 62.09 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 11 |
| 486 | 62.18 | humidity | 70.0 | 720 | > th | dose independent | rect. | 4 | 17 |
| 502 | 62.23 | humidity | 50.0 | 720 | > th | dose independent | rect. | 20 | 21 |
| 508 | 62.25 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 17 |
| 512 | 62.28 | humidity | 70.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 521 | 62.31 | humidity | 80.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 541 | 62.39 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 550 | 62.41 | humidity | 50.0 | 720 | > th | dose independent | rect. | 12 | 13 |
| 562 | 62.47 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 569 | 62.50 | wind | 1.0 | 720 | > th | dose independent | rect. | 7 | 13 |
| 582 | 62.57 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 15 |
| 586 | 62.58 | radiation | 20.0 | 720 | < th | dose independent | rect. | 5 | 2 |
| 588 | 62.58 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 613 | 62.66 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 657 | 62.72 | temperature | 10.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 658 | 62.72 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 659 | 62.72 | radiation | 30.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 664 | 62.72 | temperature | 10.0 | 720 | > th | dose independent | rect. | 19 | 22 |
| 675 | 62.75 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 7 |
| 700 | 62.81 | wind | 7.0 | 720 | < th | dose independent | rect. | 5 | 2 |
| 702 | 62.81 | temperature | 10.0 | 720 | > th | dose independent | rect. | 5 | 2 |
| 703 | 62.81 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 2 |
| 704 | 62.81 | humidity | 50.0 | 720 | > th | dose independent | rect. | 5 | 2 |
| 706 | 62.81 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 5 | 2 |
| 707 | 62.81 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 5 | 2 |
| 710 | 62.81 | temperature | 10.0 | 720 | > th | dose independent | rect. | 7 | 22 |
| 732 | 62.86 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 18 |
| 735 | 62.87 | wind | 9.0 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 767 | 62.96 | humidity | 90.0 | 720 | < th | dose independent | rect. | 8 | 12 |
| 776 | 62.99 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 5 | 2 |
| 779 | 62.99 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 820 | 63.06 | humidity | 50.0 | 720 | > th | dose dependent | sin | 0 | NA |
| 904 | 63.24 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 11 |
| 905 | 63.24 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 11 |
| 906 | 63.24 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 13 |
| 909 | 63.24 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 13 |
| 936 | 63.28 | humidity | 50.0 | 720 | > th | dose dependent | sin | 16 | NA |
| 981 | 63.40 | radiation | 40.0 | 270 | < th | dose independent | rect. | 19 | 13 |