BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0644100 Os07g0644100|AK121898
         (568 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0644100  cAMP response element binding (CREB) protein f...   828   0.0  
Os05g0411300  Conserved hypothetical protein                      239   4e-63

>Os07g0644100 cAMP response element binding (CREB) protein family protein
          Length = 568

 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/451 (92%), Positives = 417/451 (92%)

Query: 118 LVRNRESAHQSRQRKKQYVEELEGKVKVMQATIADLTARISCVTAENXXXXXXXXXXXXX 177
           LVRNRESAHQSRQRKKQYVEELEGKVKVMQATIADLTARISCVTAEN             
Sbjct: 118 LVRNRESAHQSRQRKKQYVEELEGKVKVMQATIADLTARISCVTAENAALKQQLGGAAGA 177

Query: 178 XXXXXXXXXXXXXXXXXXXXXWIHPAYAMRGSQVPLVPIPRLKTQQPASTPEPPAKKARK 237
                                WIHPAYAMRGSQVPLVPIPRLKTQQPASTPEPPAKKARK
Sbjct: 178 GAAAPPPPMPMYPAVYPLPMPWIHPAYAMRGSQVPLVPIPRLKTQQPASTPEPPAKKARK 237

Query: 238 TKKVAGVSLLGLLFLMMVCGCLVPAVNRMYGAAYTGEGAAIVPSHHGRILAVEGPQNSVS 297
           TKKVAGVSLLGLLFLMMVCGCLVPAVNRMYGAAYTGEGAAIVPSHHGRILAVEGPQNSVS
Sbjct: 238 TKKVAGVSLLGLLFLMMVCGCLVPAVNRMYGAAYTGEGAAIVPSHHGRILAVEGPQNSVS 297

Query: 298 NGVDPKVPQNGSETLPALLYLPRNGKHVKINGNLVIKSIVASEKASSRLSNYGEKGSGNQ 357
           NGVDPKVPQNGSETLPALLYLPRNGKHVKINGNLVIKSIVASEKASSRLSNYGEKGSGNQ
Sbjct: 298 NGVDPKVPQNGSETLPALLYLPRNGKHVKINGNLVIKSIVASEKASSRLSNYGEKGSGNQ 357

Query: 358 GKEETSLAIPGYVAPLEAGEVMDSAKGMNELMALAPGDGSIYREDDGMLPQWFSEAMSGP 417
           GKEETSLAIPGYVAPLEAGEVMDSAKGMNELMALAPGDGSIYREDDGMLPQWFSEAMSGP
Sbjct: 358 GKEETSLAIPGYVAPLEAGEVMDSAKGMNELMALAPGDGSIYREDDGMLPQWFSEAMSGP 417

Query: 418 MLNSGMCTEVFQFDLSPTTADANGIVPVYSGSVTNTSQNYTENLPSGPVQKVKNRRISYS 477
           MLNSGMCTEVFQFDLSPTTADANGIVPVYSGSVTNTSQNYTENLPSGPVQKVKNRRISYS
Sbjct: 418 MLNSGMCTEVFQFDLSPTTADANGIVPVYSGSVTNTSQNYTENLPSGPVQKVKNRRISYS 477

Query: 478 EAIPLRGSTSNDTDHFKAPPKNHSQSHAGRKPVSSVVVSVLADPREASDRDGEGRISSNS 537
           EAIPLRGSTSNDTDHFKAPPKNHSQSHAGRKPVSSVVVSVLADPREASDRDGEGRISSNS
Sbjct: 478 EAIPLRGSTSNDTDHFKAPPKNHSQSHAGRKPVSSVVVSVLADPREASDRDGEGRISSNS 537

Query: 538 LSRIFVVVLIDSVKYVTYSCVLPFKSHSPHL 568
           LSRIFVVVLIDSVKYVTYSCVLPFKSHSPHL
Sbjct: 538 LSRIFVVVLIDSVKYVTYSCVLPFKSHSPHL 568



>Os05g0411300 Conserved hypothetical protein
          Length = 408

 Score =  239 bits (610), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 180/468 (38%), Positives = 231/468 (49%), Gaps = 104/468 (22%)

Query: 143 VKVMQATIADLTARISCVTAENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWIHP 202
           VK M + I DL +RIS V AEN                                  W+ P
Sbjct: 1   VKSMHSVINDLNSRISFVVAENATLRQQLSGGSVNCPPPGVYPPAPIPGMHFP---WM-P 56

Query: 203 AYAMR--GSQVPLVPIPRLKTQQPAST----PEPPAKKARKTKK--------VAGVSLLG 248
            YAMR  GS VPLVPIPRLK QQP  +     +P +KK  + K         VA VSLLG
Sbjct: 57  GYAMRPPGSHVPLVPIPRLKPQQPVPSSKVVKKPESKKTVENKSKSKTKTKKVASVSLLG 116

Query: 249 LLFLMMVCGCLVPAVNRMYGAAYTGEGAAI--VPSHHGRILAVEGPQNSVSN-----GVD 301
           LL +M+V G  +P  N  +G     + A        H R+L+V     S  N     GVD
Sbjct: 117 LLLIMLVFGAFIPGFNHNFGMCGQSDNAMFRNFGQSHARVLSVSSQDKSSLNNSDMIGVD 176

Query: 302 --------------PKVPQNGSETLPALLYLPRNGKHVKINGNLVIKSIVASEKASSRLS 347
                          +   N SE LPALLY+PRNGKHVKINGNL+I S++ASEKA +  +
Sbjct: 177 VGKMTGNTDGPGKKHQPAHNSSEILPALLYVPRNGKHVKINGNLIIHSVLASEKAVAHKA 236

Query: 348 NYGEKGSGNQGKEETSLAIPGYVAPLEAGEVMDSAKGMNELMALAPGDGSIYRED----D 403
           +  +     +  +ETS+AI  Y++                     PG   + R++    D
Sbjct: 237 SKDDSDQSARDHKETSVAIARYLS--------------------LPGK-DVNRQETSSAD 275

Query: 404 GMLPQWFSEAMSGPMLNSGMCTEVFQFDLSPTTADANGIVPVYSGSVTNTSQNYTENLPS 463
           G LPQWF E M GP+LNSGMC+EVFQFD+S  +++  GI+P  S  V ++S N TE +P+
Sbjct: 276 GPLPQWFREGMEGPILNSGMCSEVFQFDISTASSNPGGIIPA-SPVVNSSSVNATEKIPA 334

Query: 464 GPVQ---KVKNRRISYSEAIPLRGSTSNDTDHFKAPPKNHSQSHAGRKPVSSVVVSVLAD 520
                  K+KNRR+ Y+EAIPL                                     D
Sbjct: 335 HSAAYHGKLKNRRVMYNEAIPL------------------------------------TD 358

Query: 521 PREASDRDGEGRISSNSLSRIFVVVLIDSVKYVTYSCVLPFKSHSPHL 568
           PREA + DG+ R+S   LS+IFVVVL+D V+YVTYSC LPFKS SPHL
Sbjct: 359 PREAGNGDGDPRVSPKPLSKIFVVVLVDGVRYVTYSCTLPFKSSSPHL 406



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,930,955
Number of extensions: 635352
Number of successful extensions: 1804
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1798
Number of HSP's successfully gapped: 2
Length of query: 568
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 462
Effective length of database: 11,501,117
Effective search space: 5313516054
Effective search space used: 5313516054
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)