BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0644100 Os07g0644100|AK121898
(568 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G40950.1 | chr2:17087823-17090326 REVERSE LENGTH=722 232 5e-61
AT3G56660.1 | chr3:20986217-20988213 REVERSE LENGTH=621 217 2e-56
AT3G10800.1 | chr3:3379326-3381430 FORWARD LENGTH=676 201 1e-51
>AT2G40950.1 | chr2:17087823-17090326 REVERSE LENGTH=722
Length = 721
Score = 232 bits (591), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 197/505 (39%), Positives = 256/505 (50%), Gaps = 75/505 (14%)
Query: 118 LVRNRESAHQSRQRKKQYVEELEGKVKVMQATIADLTARISCVTAENXXXXXXXXXXXXX 177
L+RNRESA SRQRKK YVEELE KV+ M +TI DL +IS AEN
Sbjct: 235 LMRNRESAQLSRQRKKHYVEELEEKVRNMHSTITDLNGKISYFMAENATLRQQLGGNGMC 294
Query: 178 XXXXXXXXXXXXXXXXXXXXXWIH-PAYAMR--GSQVPLVPIPRLKTQQPAST----PEP 230
W+ P Y ++ GSQVPL+PIPRLK Q T
Sbjct: 295 PPHLPPPPMGMYPPMAPMPYPWMPCPPYMVKQQGSQVPLIPIPRLKPQNTLGTSKAKKSE 354
Query: 231 PAKKARKTKKVAGVSLLGLLFLMMVCGCLVPAVNRMYG---AAYTGEGAA------IVPS 281
K KTKKVA +S LGLLF + + G L P VN YG A+ G + I
Sbjct: 355 SKKSEAKTKKVASISFLGLLFCLFLFGALAPIVNVNYGGISGAFYGNYRSNYITDQIYSQ 414
Query: 282 HHGRILAV----------------------EGPQNSVSNGVDPKVPQNGSETLPALLYLP 319
H R+L G + ++S P NGSE L A L++P
Sbjct: 415 HRDRVLDTSRSGAGTGVSNSNGMHRGRDSDRGARKNISATESSVTPGNGSEPLVASLFVP 474
Query: 320 RNGKHVKINGNLVIKSIVASEK--ASSRLSNYGEKGSGNQGKEETSLAIPGYVAPLEAGE 377
RN K VKI+GNL+I SI+ASEK AS + S E+ + ++ + A+P P + G
Sbjct: 475 RNDKLVKIDGNLIINSILASEKAVASRKASESKERKADLMISKDYTPALP---LP-DVGR 530
Query: 378 VMDSAKGM-----NELMALAPGDGSIYRED------DGMLPQWFSEAMSGPMLNSGMCTE 426
+ AK + + AL+ G ++ +G + QWF E ++GPM +SGMCTE
Sbjct: 531 TEELAKHLYRSKAEKQKALSSGSADTLKDQVKTKAANGEMQQWFREGVAGPMFSSGMCTE 590
Query: 427 VFQFDLSPTTADANGIVPVYSGSVTNTSQNYTENLPSGPVQKVKNRRISYSEAIPLRGST 486
VFQFD+S T+ I+P + TN S + +N + K +NRRI IPL GS
Sbjct: 591 VFQFDVSSTSG---AIIP----AATNVSAEHGKN--TTDTHKQQNRRILRGLPIPLPGSD 641
Query: 487 SNDTDHFKAPPKNHSQSHAGR--KPVSSVVVSVLADPREASDRDGEGRISS-NSLSRIFV 543
N T K H ++ + + KP SS+VVSVL DPRE D D +G I SLSR+FV
Sbjct: 642 FNLT-------KEHQRNSSSKEIKPASSMVVSVLVDPREGGDGDIDGMIGGPKSLSRVFV 694
Query: 544 VVLIDSVKYVTYSCVLPFKSHSPHL 568
VVL+DS KYVTYSCVLP +S +PHL
Sbjct: 695 VVLLDSAKYVTYSCVLP-RSGAPHL 718
>AT3G56660.1 | chr3:20986217-20988213 REVERSE LENGTH=621
Length = 620
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 177/483 (36%), Positives = 243/483 (50%), Gaps = 76/483 (15%)
Query: 118 LVRNRESAHQSRQRKKQYVEELEGKVKVMQATIADLTARISCVTAENXXXXXXXXXXXXX 177
LVRNRESAH SRQRKK YVEELE KVK M +TI++L++++S AEN
Sbjct: 179 LVRNRESAHLSRQRKKHYVEELEDKVKNMHSTISELSSKMSYFVAENVTLRQQMGTRFSS 238
Query: 178 XXXXXXXXXXXXXXXXXXXXXWI-HPAYAMR--GSQVPLVPIPRLKTQQPASTPEPPAKK 234
W+ +PAY ++ GSQV L+PIPRLK P+ K
Sbjct: 239 GPPMVPIVYP-----------WMQYPAYMVKPQGSQVALLPIPRLK-------PKHSVAK 280
Query: 235 ARKTKKVAGVSLLGLLFLMMVCGCLVPAVNRMYGAAYTGEGAAIVPSHHGRILAVEGPQN 294
+K KKVA S+ G LF M + G LV Y + Y +G + GR+L V+ +
Sbjct: 281 VKKFKKVASFSVFGFLFCMFLFGALVNISYGEYKSNYVTDG--VYDQSRGRVLVVDSSRV 338
Query: 295 SVSNGVDPKV------------PQNGSETLPALLYLPRNGKHVKINGNLVIKSIVASEKA 342
D V P+N SE L A L++PRN K VKI+GNL+I S++ASEKA
Sbjct: 339 HCGGDSDQGVGRNVSETENLGPPRNSSEPLVASLFVPRNEKLVKIDGNLIIHSVLASEKA 398
Query: 343 SSRLSNYGEKGSGNQGKEET---SLAIPGYVAPL----------EAGEVMDSAKGMNELM 389
+ E S +T +L +P +P E G+ + S+ G ++
Sbjct: 399 RDSETKNEEGKSVLATTTKTLSPALPLPDSTSPRTRDVSKHLYSETGKGL-SSSGSDD-- 455
Query: 390 ALAPGDGSIYREDDGMLPQWFSEAMSGPMLNSGMCTEVFQFDLSPTTADANGIVPV--YS 447
A D +G + QWF E ++GPM +SGMCTEVFQFD+S +++ I+P ++
Sbjct: 456 --ASNDQLKSTIANGKMQQWFREGVAGPMFSSGMCTEVFQFDVS---SNSGAIIPASPHT 510
Query: 448 GSVTNTSQNYTENLPSGPVQK-VKNRRISYSEAIPLRGSTSNDTDHFKAPPKNHSQSHAG 506
NTS QK KNRRI S +P+ DH + ++
Sbjct: 511 QQCKNTSD----------TQKGKKNRRI-LSGGLPVSDFNLTKEDHNSSSKDKFRET--- 556
Query: 507 RKPVSSVVVSVLADPREASDRDGEGRI-SSNSLSRIFVVVLIDSVKYVTYSCVLPFKSHS 565
KP S+VVSVL DPRE + D +G + + SR+F+VVL+D VKY+TYSCVLP +
Sbjct: 557 -KPGPSMVVSVLVDPREGGNGDIDGMMGGTKPQSRVFIVVLVDGVKYITYSCVLP-RPDV 614
Query: 566 PHL 568
PHL
Sbjct: 615 PHL 617
>AT3G10800.1 | chr3:3379326-3381430 FORWARD LENGTH=676
Length = 675
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 179/497 (36%), Positives = 243/497 (48%), Gaps = 83/497 (16%)
Query: 119 VRNRESAHQSRQRKKQYVEELEGKVKVMQATIADLTARISCVTAENXXXXXXXXXXXXXX 178
+RNRESA SR RKKQ EELE KVK M ATIA+L +I+ V AEN
Sbjct: 198 IRNRESAQLSRLRKKQQTEELERKVKSMNATIAELNGKIAYVMAENVALRQQMAVASGAP 257
Query: 179 XXXXXXXXXXXXXXXXXXXXWI-HPAYAMRG--SQVPLVPIPRLKTQQPASTPEPPAKKA 235
W+ +P Y +RG SQ PLVPIP+L +P S+ P ++
Sbjct: 258 PMNPYMAAPPLPYQ------WMPYPPYPVRGYGSQTPLVPIPKL-NPKPVSSCRPKKAES 310
Query: 236 RKT------KKVAGVSLLGLLFLMMVCGCLVPAVNRMYG---AAYTG----EGAAIVPSH 282
+K KKVA +S +G+LF + + G LVP +N +G ++ G +G H
Sbjct: 311 KKNEGKSKLKKVASISFIGILFFVFLFGTLVPFMNVNFGGERGSFGGLSKYDGHRYYDEH 370
Query: 283 HGRILAV-----------------------EGPQNSVSNGVD----PKVP------QNGS 309
GR+L V G ++S GVD PKV N S
Sbjct: 371 KGRVLMVGDGSDVRRNSGISEGNIHSSRISHGERDSCG-GVDYNAHPKVEGRPSSLSNAS 429
Query: 310 ETLPALLYLPRNGKHVKINGNLVIKSIVASEKASSRLSNYGEKGSGNQGK-EETSLAIPG 368
+ L A LY+PRN VKI+GNL+I S++ASEKA G+K K +E L IPG
Sbjct: 430 DPLFASLYVPRNDGLVKIDGNLIIHSVLASEKARG----LGKKNITETVKTKEPDLTIPG 485
Query: 369 YVAPLEAGEVMDSAKGMNELMALAPGDGSIYREDDGMLPQWFSEAMSGPMLNSGMCTEVF 428
++ A G+ A+ P ++ E L QWF E SGP+++ MCTEVF
Sbjct: 486 ALSSALA------VPGVRGNAAMLPHSTALSSEGK-RLHQWFHEGGSGPLMDYSMCTEVF 538
Query: 429 QFDLSPTTADANGIVPVYSGSVTNTSQNYTENLPSGPVQKVKNRRISYSEAIPLRGSTSN 488
QFD++P + + + + + N + + +++KNRRI + L S N
Sbjct: 539 QFDIAPGAIVPSSVSSISAEHLQNVTTHG---------KRMKNRRILEGLPVSLVASELN 589
Query: 489 DT-DHFKAPPKNHSQSHAGRKPV--SSVVVSVLADPREASDRDGEGRISSN--SLSRIFV 543
T +N + + KP SS+VVSVL DPRE D + + + N SLSRIFV
Sbjct: 590 ITGTQPNKDAQNKTFNGNTNKPTSSSSMVVSVLLDPREVVDSETDRVVPPNPKSLSRIFV 649
Query: 544 VVLIDSVKYVTYSCVLP 560
VVL+DSVKYVTYSCVLP
Sbjct: 650 VVLLDSVKYVTYSCVLP 666
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.130 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,301,863
Number of extensions: 388758
Number of successful extensions: 1104
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1089
Number of HSP's successfully gapped: 5
Length of query: 568
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 464
Effective length of database: 8,255,305
Effective search space: 3830461520
Effective search space used: 3830461520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)