BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0406000 Os05g0406000|AK062289
         (174 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0406000  Conserved hypothetical protein                      280   5e-76
Os03g0659800  Conserved hypothetical protein                      122   2e-28
Os01g0768300                                                      120   4e-28
Os04g0616000  Conserved hypothetical protein                      110   4e-25

>Os05g0406000 Conserved hypothetical protein
          Length = 174

 Score =  280 bits (715), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 144/174 (82%), Positives = 144/174 (82%)

Query: 1   DEDSAFPVSKSSQLXXXXXXXXXXXXXXXPDVPRPPRPHVFLPSYNSTPRVTPPDSPPRS 60
           DEDSAFPVSKSSQL               PDVPRPPRPHVFLPSYNSTPRVTPPDSPPRS
Sbjct: 1   DEDSAFPVSKSSQLSETASSVSEESSHVEPDVPRPPRPHVFLPSYNSTPRVTPPDSPPRS 60

Query: 61  FAXXXXXXXXXXXXXXXNLFDDRSSAYSGHSSVTSPFDAGSHTGRTRVDGKEFFRQVRNR 120
           FA               NLFDDRSSAYSGHSSVTSPFDAGSHTGRTRVDGKEFFRQVRNR
Sbjct: 61  FASISPPRRHSISITSRNLFDDRSSAYSGHSSVTSPFDAGSHTGRTRVDGKEFFRQVRNR 120

Query: 121 LSYEQFSAFLANVKELNSHKQTREDTLRKADEIFGPDNKDLYTIFEGLITRNIH 174
           LSYEQFSAFLANVKELNSHKQTREDTLRKADEIFGPDNKDLYTIFEGLITRNIH
Sbjct: 121 LSYEQFSAFLANVKELNSHKQTREDTLRKADEIFGPDNKDLYTIFEGLITRNIH 174



>Os03g0659800 Conserved hypothetical protein
          Length = 132

 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 70/84 (83%), Gaps = 1/84 (1%)

Query: 91  SSVTSPFDAGSHTGRT-RVDGKEFFRQVRNRLSYEQFSAFLANVKELNSHKQTREDTLRK 149
           S+  SP     + GRT R+DGKEFFRQ R+RLSYEQF AFLAN+KELN+HKQ+REDTL+K
Sbjct: 48  SAANSPPRGRPNPGRTPRIDGKEFFRQARSRLSYEQFGAFLANIKELNAHKQSREDTLKK 107

Query: 150 ADEIFGPDNKDLYTIFEGLITRNI 173
           A+EIFGPDNKDLY  F+GL+ R++
Sbjct: 108 AEEIFGPDNKDLYLSFQGLLNRSL 131



>Os01g0768300 
          Length = 347

 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 72/84 (85%), Gaps = 1/84 (1%)

Query: 91  SSVTSPFDAGSHTGRT-RVDGKEFFRQVRNRLSYEQFSAFLANVKELNSHKQTREDTLRK 149
           S+  SP  A S +GRT RVDGKEFFRQ RNRLSYEQF+AFLAN+KELN+H+Q+RE+TL+K
Sbjct: 263 SAANSPPRAHSISGRTTRVDGKEFFRQARNRLSYEQFAAFLANIKELNAHRQSREETLQK 322

Query: 150 ADEIFGPDNKDLYTIFEGLITRNI 173
           ADEIFG +NKDL+  F+ L++R++
Sbjct: 323 ADEIFGSENKDLFMSFQSLLSRSL 346



>Os04g0616000 Conserved hypothetical protein
          Length = 312

 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 64/83 (77%)

Query: 90  HSSVTSPFDAGSHTGRTRVDGKEFFRQVRNRLSYEQFSAFLANVKELNSHKQTREDTLRK 149
           +S+ TSP    S  GR R+DGKEFFRQ R RLSYEQF AFLAN+KE N+ KQ+REDTL K
Sbjct: 228 YSAPTSPPQHRSFAGRPRIDGKEFFRQARTRLSYEQFGAFLANIKEFNAQKQSREDTLSK 287

Query: 150 ADEIFGPDNKDLYTIFEGLITRN 172
           A+EIFG ++KDLY  F+ ++ RN
Sbjct: 288 AEEIFGTEHKDLYISFQNMLNRN 310



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,604,483
Number of extensions: 220067
Number of successful extensions: 1208
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1208
Number of HSP's successfully gapped: 4
Length of query: 174
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 80
Effective length of database: 12,127,685
Effective search space: 970214800
Effective search space used: 970214800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)