Os05g0406000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0406000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.09 | 0.361 | 12.7 | -1.77 | 0.841 | 0.871 | 0.161 | -1.76 | -0.729 | 3.84 | 25.91 | 5890 | -- | -- |
| 60.19 | 0.361 | 12.6 | -1.27 | 0.84 | 0.713 | 0.232 | -- | -0.621 | 3.88 | 25.59 | 5941 | -- | -- |
| 59.17 | 0.358 | 12.7 | -1.78 | 0.844 | 0.872 | -- | -1.77 | -0.73 | 3.81 | 25.95 | 5900 | -- | -- |
| 60.27 | 0.362 | 12.6 | -1.28 | 0.837 | 0.708 | -- | -- | -0.615 | 3.86 | 25.74 | 5927 | -- | -- |
| 97.94 | 0.461 | 12.7 | -1.56 | -- | 0.796 | -- | -0.669 | -0.89 | -- | 23.79 | 8447 | -- | -- |
| 79.86 | 0.419 | 12.6 | -1.01 | 0.849 | -- | 0.276 | -- | -0.531 | 3.87 | -- | -- | -- | -- |
| 80.07 | 0.419 | 12.6 | -1.02 | 0.85 | -- | -- | -- | -0.532 | 3.82 | -- | -- | -- | -- |
| 95.29 | 0.455 | 12.6 | -1.3 | -- | 0.782 | -- | -- | -0.58 | -- | 26.1 | 5612 | -- | -- |
| 98.76 | 0.463 | 12.5 | -- | 0.82 | 0.429 | -- | -- | -0.389 | 3.75 | 28.1 | 5886 | -- | -- |
| 119.85 | 0.512 | 12.6 | -0.982 | -- | -- | -- | -- | -0.51 | -- | -- | -- | -- | -- |
| 107.33 | 0.485 | 12.5 | -- | 0.83 | -- | -- | -- | -0.419 | 3.84 | -- | -- | -- | -- |
| 132.83 | 0.537 | 12.5 | -- | -- | 0.493 | -- | -- | -0.35 | -- | 28.44 | 5611 | -- | -- |
| 145.28 | 0.563 | 12.5 | -- | -- | -- | -- | -- | -0.401 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.51 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 3 | 57.69 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 5 | 57.82 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 6 | 57.88 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 7 | 57.89 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 12 | 58.02 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 15 | 58.10 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 45 | 59.03 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 46 | 59.03 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 50 | 59.09 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 54 | 59.12 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 77 | 59.63 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 14 | 5 |
| 95 | 59.77 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 106 | 59.90 | humidity | 80.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 115 | 59.93 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 132 | 60.06 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 135 | 60.08 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 143 | 60.11 | humidity | 80.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 144 | 60.11 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 155 | 60.16 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 169 | 60.22 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 210 | 60.38 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 235 | 60.45 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 248 | 60.52 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 8 |
| 285 | 60.64 | humidity | 70.0 | 14400 | > th | dose dependent | sin | 18 | NA |
| 319 | 60.74 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 320 | 60.74 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 321 | 60.74 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 326 | 60.76 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 468 | 61.07 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 592 | 61.30 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 620 | 61.35 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 653 | 61.40 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 658 | 61.41 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 682 | 61.44 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 683 | 61.44 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 684 | 61.44 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 688 | 61.44 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 735 | 61.51 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 887 | 61.68 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 898 | 61.69 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 899 | 61.69 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 907 | 61.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 908 | 61.69 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 914 | 61.69 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 940 | 61.72 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |