BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0406000 Os05g0406000|AK062289
(174 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G15545.1 | chr4:8875932-8877567 FORWARD LENGTH=338 148 1e-36
AT1G16520.1 | chr1:5648904-5650998 FORWARD LENGTH=326 115 8e-27
AT1G56080.1 | chr1:20974457-20976215 REVERSE LENGTH=311 108 2e-24
>AT4G15545.1 | chr4:8875932-8877567 FORWARD LENGTH=338
Length = 337
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 96/154 (62%), Gaps = 17/154 (11%)
Query: 31 DVPRPPRPHVF-LPSYNSTPRVTPPDSPPRSFAXXXXXXXX---------XXXXXXXNLF 80
D P+P L S +TPR+TPP SPP A +F
Sbjct: 191 DAPKPSLSASLPLVSQTTTPRLTPPGSPPILSASGTPKTTSRPISPRRHSVSFATTRGMF 250
Query: 81 DDRSSAYSGHSSVTSPFDAGSHTGRTRVDGKEFFRQVRNRLSYEQFSAFLANVKELNSHK 140
DD S+ S ++ P GS T RTRVDGKEFFRQVR+RLSYEQF AFL NVK+LN+HK
Sbjct: 251 DDTRSSIS----ISEP---GSQTARTRVDGKEFFRQVRSRLSYEQFGAFLGNVKDLNAHK 303
Query: 141 QTREDTLRKADEIFGPDNKDLYTIFEGLITRNIH 174
QTRE+TLRKA+EIFG DN+DLY IFEGLITRN H
Sbjct: 304 QTREETLRKAEEIFGGDNRDLYVIFEGLITRNAH 337
>AT1G16520.1 | chr1:5648904-5650998 FORWARD LENGTH=326
Length = 325
Score = 115 bits (289), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 61/68 (89%)
Query: 107 RVDGKEFFRQVRNRLSYEQFSAFLANVKELNSHKQTREDTLRKADEIFGPDNKDLYTIFE 166
R+DGKEFFRQ R+RLSYEQFS+FLAN+KELN+ KQTRE+TLRKADEIFG +NKDLY F+
Sbjct: 258 RMDGKEFFRQARSRLSYEQFSSFLANIKELNAQKQTREETLRKADEIFGEENKDLYLSFQ 317
Query: 167 GLITRNIH 174
GL+ RN+
Sbjct: 318 GLLNRNMR 325
>AT1G56080.1 | chr1:20974457-20976215 REVERSE LENGTH=311
Length = 310
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 86/135 (63%), Gaps = 6/135 (4%)
Query: 40 VFLPSYNSTPRVTPPDSPPRSF-AXXXXXXXXXXXXXXXNLFDDRS-SAYSGHSSVT-SP 96
F PS TP++ + PRS+ A + +D R S+ S SSV SP
Sbjct: 175 AFTPS--GTPKILSTAASPRSYSAASSPKLFSGAASPTSSHYDIRMWSSTSQQSSVANSP 232
Query: 97 FDAGSHTGRT-RVDGKEFFRQVRNRLSYEQFSAFLANVKELNSHKQTREDTLRKADEIFG 155
+ S + R R+DGKEFFRQ R+RLSYEQFSAFLAN+KELN+ KQ RE+TL+KA+EIFG
Sbjct: 233 PRSHSVSARHPRIDGKEFFRQARSRLSYEQFSAFLANIKELNARKQGREETLQKAEEIFG 292
Query: 156 PDNKDLYTIFEGLIT 170
+N DLY F+GL+T
Sbjct: 293 KENNDLYISFKGLLT 307
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,447,983
Number of extensions: 130165
Number of successful extensions: 817
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 816
Number of HSP's successfully gapped: 3
Length of query: 174
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 82
Effective length of database: 8,584,297
Effective search space: 703912354
Effective search space used: 703912354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)