Os04g0616000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0616000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.74 | 0.331 | 7.37 | 0.409 | 0.53 | 1.14 | -0.674 | 0.483 | 0.274 | 7.05 | 20.3 | 1416 | -- | -- |
| 49.09 | 0.326 | 7.4 | 0.408 | 0.515 | 0.976 | -0.712 | -- | 0.255 | 7.27 | 20.9 | 1280 | -- | -- |
| 50.92 | 0.332 | 7.37 | 0.4 | 0.531 | 1.15 | -- | 0.494 | 0.27 | 7.12 | 20.3 | 1417 | -- | -- |
| 50.37 | 0.331 | 7.39 | 0.349 | 0.542 | 0.974 | -- | -- | 0.257 | 7.36 | 20.98 | 1260 | -- | -- |
| 65.3 | 0.376 | 7.39 | 0.426 | -- | 1.1 | -- | 0.436 | 0.263 | -- | 20.67 | 1391 | -- | -- |
| 73.71 | 0.402 | 7.34 | 0.766 | 0.545 | -- | -0.857 | -- | 0.487 | 6.81 | -- | -- | -- | -- |
| 75.58 | 0.407 | 7.33 | 0.751 | 0.542 | -- | -- | -- | 0.49 | 6.88 | -- | -- | -- | -- |
| 65.52 | 0.377 | 7.4 | 0.334 | -- | 1 | -- | -- | 0.248 | -- | 21 | 1344 | -- | -- |
| 52.65 | 0.338 | 7.4 | -- | 0.583 | 1.16 | -- | -- | 0.173 | 7.25 | 20.63 | 2112 | -- | -- |
| 90.97 | 0.446 | 7.35 | 0.763 | -- | -- | -- | -- | 0.5 | -- | -- | -- | -- | -- |
| 90.46 | 0.445 | 7.35 | -- | 0.551 | -- | -- | -- | 0.406 | 6.8 | -- | -- | -- | -- |
| 68.01 | 0.384 | 7.41 | -- | -- | 1.12 | -- | -- | 0.191 | -- | 20.7 | 1406 | -- | -- |
| 106.33 | 0.481 | 7.37 | -- | -- | -- | -- | -- | 0.415 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 4 | 48.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 15 | 48.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 27 | 48.89 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 64 | 49.13 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 178 | 49.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 304 | 50.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 337 | 50.28 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 358 | 50.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 373 | 50.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 396 | 50.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 418 | 50.58 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 457 | 50.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 471 | 50.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 473 | 50.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 488 | 50.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 495 | 50.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 540 | 51.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 554 | 51.08 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 584 | 51.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 591 | 51.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 613 | 51.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 679 | 51.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 767 | 51.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 775 | 51.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 806 | 51.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 827 | 51.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 852 | 52.01 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 868 | 52.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 890 | 52.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 5 |
| 929 | 52.18 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |