BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0616000 Os04g0616000|AK106295
(312 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0616000 Conserved hypothetical protein 456 e-129
Os01g0768300 181 5e-46
Os03g0659800 Conserved hypothetical protein 138 4e-33
Os05g0406000 Conserved hypothetical protein 110 1e-24
>Os04g0616000 Conserved hypothetical protein
Length = 312
Score = 456 bits (1174), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/312 (75%), Positives = 234/312 (75%)
Query: 1 MGRHEAAAGVVDFHLPDEILAVIPTDPYEQLDVARKITSMAIASRVXXXXXXXXXXXXXX 60
MGRHEAAAGVVDFHLPDEILAVIPTDPYEQLDVARKITSMAIASRV
Sbjct: 1 MGRHEAAAGVVDFHLPDEILAVIPTDPYEQLDVARKITSMAIASRVSRLEADAARLRRDL 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXENAKLAKERDSLASTAKKMARNLAKLEAFKKQLM 120
ENAKLAKERDSLASTAKKMARNLAKLEAFKKQLM
Sbjct: 61 ADRDRAEADLRARLADSDARLLAALDENAKLAKERDSLASTAKKMARNLAKLEAFKKQLM 120
Query: 121 KSLSEDNLLQLSEIGDDRDFDANNNLTARVPSWKXXXXXXXXXXXXXXXXXXXXXXQEHQ 180
KSLSEDNLLQLSEIGDDRDFDANNNLTARVPSWK QEHQ
Sbjct: 121 KSLSEDNLLQLSEIGDDRDFDANNNLTARVPSWKDEVSSSRTSADSSSRSTMTESAQEHQ 180
Query: 181 FSVTPYTAPKLTPGSTPKFLSGPTSPTKSLSEVXXXXXXXXXXXXXXXXAPTSPPQHRSF 240
FSVTPYTAPKLTPGSTPKFLSGPTSPTKSLSEV APTSPPQHRSF
Sbjct: 181 FSVTPYTAPKLTPGSTPKFLSGPTSPTKSLSEVHSTFSSWHGSSSHQYSAPTSPPQHRSF 240
Query: 241 AGRPRIDGKEFFRQARTRLSYEQFGAFLANIKEFNAQKQSREDTLSKAEEIFGTEHKDLY 300
AGRPRIDGKEFFRQARTRLSYEQFGAFLANIKEFNAQKQSREDTLSKAEEIFGTEHKDLY
Sbjct: 241 AGRPRIDGKEFFRQARTRLSYEQFGAFLANIKEFNAQKQSREDTLSKAEEIFGTEHKDLY 300
Query: 301 ISFQNMLNRNHS 312
ISFQNMLNRNHS
Sbjct: 301 ISFQNMLNRNHS 312
>Os01g0768300
Length = 347
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 160/330 (48%), Gaps = 37/330 (11%)
Query: 15 LPDEILAVIPTDPYEQLDVARKITSMA-------IASRVXXXXXXXXXXXXXXXXXXXXX 67
LPD I A +P DPYEQL+VARKIT++A +
Sbjct: 23 LPDAIAAALPPDPYEQLEVARKITAVAVAARASRLELEAARLRQKLADKDRLAAELADRA 82
Query: 68 XXXXXXXXXXXXXXXXXXXENAKLAKERDSLASTAKKMARNLAKLEAFKKQLMKSLSEDN 127
+NAKLAKERDSLA T+KK+AR+LAKLE FK+ LM+SL +DN
Sbjct: 83 ASLEQALRDSDARLRAALDDNAKLAKERDSLAHTSKKLARDLAKLETFKRHLMQSLGDDN 142
Query: 128 LLQLSEIGDDRDFDANNNLTARVPSWKXXXXXXXXXXXXXXXXXXXXXXQ---------- 177
I + D A+ SWK +
Sbjct: 143 ----PPIQETVDIRTCEQSVAKASSWKDGVAHSRHHHPVSSLADGSTEIESVNQEVARPF 198
Query: 178 EHQFSVTPYTAPKLTPGSTPKFLSGPTSPTKSLSEVXXXXXXXXXX-------------- 223
E + SVT + +P+LT K + TSP + + V
Sbjct: 199 EQKLSVT-HISPRLTSDPAAKTRTAATSPRRYSTAVSPKLAASATSPRLEGHMAMQPWLP 257
Query: 224 XXXXXXAPTSPPQHRSFAGRP-RIDGKEFFRQARTRLSYEQFGAFLANIKEFNAQKQSRE 282
A SPP+ S +GR R+DGKEFFRQAR RLSYEQF AFLANIKE NA +QSRE
Sbjct: 258 SSKMSSAANSPPRAHSISGRTTRVDGKEFFRQARNRLSYEQFAAFLANIKELNAHRQSRE 317
Query: 283 DTLSKAEEIFGTEHKDLYISFQNMLNRNHS 312
+TL KA+EIFG+E+KDL++SFQ++L+R+ S
Sbjct: 318 ETLQKADEIFGSENKDLFMSFQSLLSRSLS 347
>Os03g0659800 Conserved hypothetical protein
Length = 132
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/122 (59%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Query: 190 KLTPGSTPKFLSGPTSPTKSLSEVXXXXXXXXXXXXXXXXAPTSPPQHRSFAGR-PRIDG 248
+++ +TPK +SG TSP+K+ E A SPP+ R GR PRIDG
Sbjct: 10 RMSTTATPKLMSGTTSPSKTRIEGYMSMTPWYPSSKQSSAA-NSPPRGRPNPGRTPRIDG 68
Query: 249 KEFFRQARTRLSYEQFGAFLANIKEFNAQKQSREDTLSKAEEIFGTEHKDLYISFQNMLN 308
KEFFRQAR+RLSYEQFGAFLANIKE NA KQSREDTL KAEEIFG ++KDLY+SFQ +LN
Sbjct: 69 KEFFRQARSRLSYEQFGAFLANIKELNAHKQSREDTLKKAEEIFGPDNKDLYLSFQGLLN 128
Query: 309 RN 310
R+
Sbjct: 129 RS 130
>Os05g0406000 Conserved hypothetical protein
Length = 174
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 79/134 (58%), Gaps = 2/134 (1%)
Query: 179 HQFSVTPYTAPKLTPGSTPKFLSGPTSPTK--SLSEVXXXXXXXXXXXXXXXXAPTSPPQ 236
H F + + P++TP +P SP + S+S + TSP
Sbjct: 39 HVFLPSYNSTPRVTPPDSPPRSFASISPPRRHSISITSRNLFDDRSSAYSGHSSVTSPFD 98
Query: 237 HRSFAGRPRIDGKEFFRQARTRLSYEQFGAFLANIKEFNAQKQSREDTLSKAEEIFGTEH 296
S GR R+DGKEFFRQ R RLSYEQF AFLAN+KE N+ KQ+REDTL KA+EIFG ++
Sbjct: 99 AGSHTGRTRVDGKEFFRQVRNRLSYEQFSAFLANVKELNSHKQTREDTLRKADEIFGPDN 158
Query: 297 KDLYISFQNMLNRN 310
KDLY F+ ++ RN
Sbjct: 159 KDLYTIFEGLITRN 172
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.128 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,368,992
Number of extensions: 218082
Number of successful extensions: 473
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 470
Number of HSP's successfully gapped: 6
Length of query: 312
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 211
Effective length of database: 11,762,187
Effective search space: 2481821457
Effective search space used: 2481821457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)